Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01928 ATGTGGGGAGCAGAGACTACTCAACAAGGAAATTGCTCCAAATACGTAGGCAGAGAGCTTCCTCATTGTTGTGAGAAGAAGCCGGAAATTGTTGATCTAATGCCGGGAGCTCCTTATAAGTTGCAAGTGGCCAATTGCTGTAAAGCAGGTGTTCTATCTTCCATGAGACAAGAGTCTTCCAATTCTGGAGCTGCCTTCCAAATGAATGTTGGGAAGTCTTCTGGAAAGGATGTAGATAGCAAAATGCCAGCAAATTTCACACTGGGGCTTCCTGGATATACTTGTAGTGAACCATTTCAAGTCCCTCCAACCAAGTTCAGTAAGGATGGTGGTCGCCGGTGGATGCAAGTTCTAGAAACATGGAATGTGACCTGTGTTTACTCTCAATTCCGATCATCACCGACACCGGGGTGCTGCGTTTCATTGTCATCCTTCTACAACAGCACCATTGTCCCTTGCCCTCAGTGCAGCTGTGGTTGCCAAGGGCTAAAGGGAACAAAATGTGTCAAGTCAGGTGAAGCTCCTTCAGTGTTGCAACTTCCACATGAACACAACACTGCTGAAGTAGAAGCATTGGTGAGGTGTTCACAGCACATGTGCCCAATAAGGGTGCATTGGCATGTGAAACAGAGTTATACACAGTATTGGAGGGTAAAGATAACAATCACAAATCTAAATTTTGCTAAGAATTACTCTGATTGGAACTTAGTAGTAATGCATCCCAATTTGCGGAATATTACTCAAGTTTTCAGCTTCAACTACAGCCCCCTCAATCAGTATGGTAACATCAATGACACGGGGATGTTTTGGGGGATACACTTCTACAATGACTTATTACTCACATCAGGAGAGAGAGGGAATGTCCAAACAGAAATTCTTCTCCAAAAAGATTCAGAAATTTTCACTTTCAGAGAAGGATGGGCATTTCCAAGAAGAATTATGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATAAAGCACACAGGAGCATGACAGCCCCATTGGTAGTTTTCTTCTTCTTGTTTCTTTCTCTATCATTATGA 1068 43.35 MWGAETTQQGNCSKYVGRELPHCCEKKPEIVDLMPGAPYKLQVANCCKAGVLSSMRQESSNSGAAFQMNVGKSSGKDVDSKMPANFTLGLPGYTCSEPFQVPPTKFSKDGGRRWMQVLETWNVTCVYSQFRSSPTPGCCVSLSSFYNSTIVPCPQCSCGCQGLKGTKCVKSGEAPSVLQLPHEHNTAEVEALVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSDWNLVVMHPNLRNITQVFSFNYSPLNQYGNINDTGMFWGIHFYNDLLLTSGERGNVQTEILLQKDSEIFTFREGWAFPRRIMFNGDECVMPPPDQYPRLPNKAHRSMTAPLVVFFFLFLSLSL* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15085101 15087838 - CsaV3_3G019280.1 Csa03g01928 522833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01928 355 Pfam COBRA-like protein 1 128 IPR006918 GO:0010215|GO:0031225
Csa03g01928 355 PIRSF COBRA 1 355 IPR006918 GO:0010215|GO:0031225
Csa03g01928 355 PANTHER COBRA-LIKE PROTEIN 6 1 350 - -
Csa03g01928 355 PANTHER PROTEIN COBRA 1 350 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01928 Csa-Chr3:15085101 Csa04g01018 Csa-Chr4:7964202 9.83E-136 dispersed
Csa03g01928 Csa-Chr3:15085101 Csa04g01017 Csa-Chr4:7962730 2.34E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01928 - - csv:101210777 735.717