Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g01943 | ATGGGTTGCGTTTGCTGTAAGCCCTCTGCTATTGAAGATAGCAAGGAAAGTCCAAGGGATAGGGTCTCAAGTAAGACCTCTTCTGACCTGCGGGTTGCAAGATTGACTTCGTCATCGAGGGAAGAAGCTTATCGAGCTAAAGATCAGTATGATGGTAATGATGCGAGAGTGACGTTGATTGACAAGCAGGTGAATGGGTCGGGTCGACTGCCAGGCGAGAATTGTGAGAGGAAGAGGGAGAAGATGGAGCATATGACTGCTCAACATCCTTCAATGGGGAGAATTCCGAAGGCAGCAGAGGGAGACCACATTGCTGCAGGCTGGCCGCCATGGCTGGCTGCAGTTGCAGGAGAGGCAATCAGAGGATGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAATTGGCCAAGGGACTTATAGTAATGTATATAGGGCTCGGGATCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGACAACCTGGAACCTGAGAGCGTTCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGACTTGATCATCCAAATGTAATAAAGCTGGAGGGTCTAGTTACATCTCGGATGTCTTGCAGCCTCTATCTTGTTTTTGAGTACATGGAACATGACCTGGCAGGACTTGCATCACACCCTGGTGTGAAGTTTACAGAGGCGCAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGTCATGGAGTTCTACATCGTGATATAAAGGGTTCCAACCTTTTAATTGACAATCATGGCATCTTGAAAATTGCAGACTTTGGTCTAGCAAGTTTTTTTGATATCCATCAAAATCAGCCTCTGACTAGTCGGGTTGTAACACTTTGGTATCGACCACCTGAGCTTTTACTTGGTGCCACTTATTACGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACGGAGGTGGAACAGTTACATAAAATATTTAAACTCTGTGGCTCTCCTTCAGAGGATTATTGGAGGAAATCAAGGTTGCCTCATGCAACAATATTTAAGCCCCAACAACCCTATAGACGTTGTGTTGCAGACACATTTAAGGATTTTCCTGCACCTGCTTTAGCTCTCATTGAGACCTTGCTCTCTATAGATCCTGCAGATCGTGGCTCTGCTGCTCTCGCCCTTAAAAGTGAATTTTTTTCAGCAAAGCCACTACCTTGTGATCCTTCAAGCTTGCCAAAGTATCCTCCAAGCAAAGAATTTGATGCCAAAATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAGGGACACCGGCTTGACCTGCAAAGAAAAGATCGAGATTCCAGAGCTGTCCCTGCACCTGATGCCAATGCTGAATTAGCCTCATCAATGCAGAAAAGACAAGGCCTGTCCAGTTCAAAGAGCCGGAGTGAGAAGTTTAACCCACATCCAGAAGAGGCTTCTGGCTTTCCAATTGATCCACCTAGACCTTCACAAGGAGCAGAAAGAATGGATTCTCAGGTGCGTCATCCTAAGAAAGCCTCACATTCAGGGCCACTTGCTCAGCGTGCTGCTTGGGCGAAGGCTAGTAGGAACCCAGATGACCCTCCCAAAATTTCAACTGGGACCGAAACTTTCGCAACTTCAGGACTAGTAGCAGCTAGAAGAAGTATGCTGGCTGAAGATTGTAGGGAAAAATCTGATTCTTCACAAGGAGAGGTTCAAAAGCTAATTGGTAGGTTTCCCGGTTCCTTCAAAGAAACCTCAGAGTCGTCAATGCTACCGGACCAGAAGTTCTCAAATCACAGTATTGCAGGCTCACATGACAAAGAGAGGAGCAGCACTAAAGACCCTATAGTTGTGGGCTATGGCTCGAAGGGTCATAAGATTCATTATTCTGGTCCATTACTGGTTCCTTCCGGTAACATGGACCAAATGTTGAAGGACCACGACCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTTGACAAGGCCAAGGTACGGAAGATTCAAGCTGATGGGAAACAGATATCGACAAATTCATTATTCGTCTCAGGTCGTTAA | 2124 | 45.81 | MGCVCCKPSAIEDSKESPRDRVSSKTSSDLRVARLTSSSREEAYRAKDQYDGNDARVTLIDKQVNGSGRLPGENCERKREKMEHMTAQHPSMGRIPKAAEGDHIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNHGILKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSIDPADRGSAALALKSEFFSAKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRLDLQRKDRDSRAVPAPDANAELASSMQKRQGLSSSKSRSEKFNPHPEEASGFPIDPPRPSQGAERMDSQVRHPKKASHSGPLAQRAAWAKASRNPDDPPKISTGTETFATSGLVAARRSMLAEDCREKSDSSQGEVQKLIGRFPGSFKETSESSMLPDQKFSNHSIAGSHDKERSSTKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKIQADGKQISTNSLFVSGR* | 708 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 15340938 | 15347903 | + | CsaV3_3G019430.1 | Csa03g01943 | 522848 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g01943 | 707 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 251 | 263 | IPR008271 | GO:0004672|GO:0006468 | |
Csa03g01943 | 707 | MobiDBLite | consensus disorder prediction | 12 | 27 | - | - | |
Csa03g01943 | 707 | Gene3D | Phosphorylase Kinase; domain 1 | 118 | 213 | - | - | |
Csa03g01943 | 707 | SUPERFAMILY | Protein kinase-like (PK-like) | 125 | 422 | IPR011009 | - | |
Csa03g01943 | 707 | ProSiteProfiles | Protein kinase domain profile. | 131 | 415 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g01943 | 707 | MobiDBLite | consensus disorder prediction | 603 | 636 | - | - | |
Csa03g01943 | 707 | ProSitePatterns | Protein kinases ATP-binding region signature. | 137 | 160 | IPR017441 | GO:0005524 | |
Csa03g01943 | 707 | Pfam | Protein kinase domain | 131 | 415 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g01943 | 707 | PANTHER | CELL DIVISION PROTEIN KINASE | 1 | 689 | - | - | |
Csa03g01943 | 707 | MobiDBLite | consensus disorder prediction | 445 | 566 | - | - | |
Csa03g01943 | 707 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Csa03g01943 | 707 | CDD | STKc_CDK9_like | 131 | 415 | - | - | |
Csa03g01943 | 707 | MobiDBLite | consensus disorder prediction | 604 | 621 | - | - | |
Csa03g01943 | 707 | MobiDBLite | consensus disorder prediction | 445 | 471 | - | - | |
Csa03g01943 | 707 | PANTHER | CYCLIN-DEPENDENT KINASE | 1 | 689 | - | - | |
Csa03g01943 | 707 | Gene3D | Transferase(Phosphotransferase) domain 1 | 214 | 454 | - | - | |
Csa03g01943 | 707 | MobiDBLite | consensus disorder prediction | 480 | 496 | - | - | |
Csa03g01943 | 707 | SMART | serkin_6 | 131 | 415 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00572 | Csa-Chr1:3682563 | Csa03g01943 | Csa-Chr3:15340938 | 0 | dispersed | |
Csa01g02837 | Csa-Chr1:24909570 | Csa03g01943 | Csa-Chr3:15340938 | 0 | dispersed | |
Csa03g01412 | Csa-Chr3:10610724 | Csa03g01943 | Csa-Chr3:15340938 | 0 | dispersed | |
Csa03g01943 | Csa-Chr3:15340938 | Csa06g01089 | Csa-Chr6:8991456 | 0 | dispersed | |
Csa04g01219 | Csa-Chr4:10816402 | Csa03g01943 | Csa-Chr3:15340938 | 6.56E-105 | dispersed | |
Csa03g01943 | Csa-Chr3:15340938 | Csa02g00346 | Csa-Chr2:2385123 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78000 | PF00069 | Pkinase | 1.00E-68 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g01943 | - | - | csv:101222182 | 1431.0 |