Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01943 ATGGGTTGCGTTTGCTGTAAGCCCTCTGCTATTGAAGATAGCAAGGAAAGTCCAAGGGATAGGGTCTCAAGTAAGACCTCTTCTGACCTGCGGGTTGCAAGATTGACTTCGTCATCGAGGGAAGAAGCTTATCGAGCTAAAGATCAGTATGATGGTAATGATGCGAGAGTGACGTTGATTGACAAGCAGGTGAATGGGTCGGGTCGACTGCCAGGCGAGAATTGTGAGAGGAAGAGGGAGAAGATGGAGCATATGACTGCTCAACATCCTTCAATGGGGAGAATTCCGAAGGCAGCAGAGGGAGACCACATTGCTGCAGGCTGGCCGCCATGGCTGGCTGCAGTTGCAGGAGAGGCAATCAGAGGATGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAATTGGCCAAGGGACTTATAGTAATGTATATAGGGCTCGGGATCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGACAACCTGGAACCTGAGAGCGTTCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGACTTGATCATCCAAATGTAATAAAGCTGGAGGGTCTAGTTACATCTCGGATGTCTTGCAGCCTCTATCTTGTTTTTGAGTACATGGAACATGACCTGGCAGGACTTGCATCACACCCTGGTGTGAAGTTTACAGAGGCGCAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGTCATGGAGTTCTACATCGTGATATAAAGGGTTCCAACCTTTTAATTGACAATCATGGCATCTTGAAAATTGCAGACTTTGGTCTAGCAAGTTTTTTTGATATCCATCAAAATCAGCCTCTGACTAGTCGGGTTGTAACACTTTGGTATCGACCACCTGAGCTTTTACTTGGTGCCACTTATTACGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACGGAGGTGGAACAGTTACATAAAATATTTAAACTCTGTGGCTCTCCTTCAGAGGATTATTGGAGGAAATCAAGGTTGCCTCATGCAACAATATTTAAGCCCCAACAACCCTATAGACGTTGTGTTGCAGACACATTTAAGGATTTTCCTGCACCTGCTTTAGCTCTCATTGAGACCTTGCTCTCTATAGATCCTGCAGATCGTGGCTCTGCTGCTCTCGCCCTTAAAAGTGAATTTTTTTCAGCAAAGCCACTACCTTGTGATCCTTCAAGCTTGCCAAAGTATCCTCCAAGCAAAGAATTTGATGCCAAAATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAGGGACACCGGCTTGACCTGCAAAGAAAAGATCGAGATTCCAGAGCTGTCCCTGCACCTGATGCCAATGCTGAATTAGCCTCATCAATGCAGAAAAGACAAGGCCTGTCCAGTTCAAAGAGCCGGAGTGAGAAGTTTAACCCACATCCAGAAGAGGCTTCTGGCTTTCCAATTGATCCACCTAGACCTTCACAAGGAGCAGAAAGAATGGATTCTCAGGTGCGTCATCCTAAGAAAGCCTCACATTCAGGGCCACTTGCTCAGCGTGCTGCTTGGGCGAAGGCTAGTAGGAACCCAGATGACCCTCCCAAAATTTCAACTGGGACCGAAACTTTCGCAACTTCAGGACTAGTAGCAGCTAGAAGAAGTATGCTGGCTGAAGATTGTAGGGAAAAATCTGATTCTTCACAAGGAGAGGTTCAAAAGCTAATTGGTAGGTTTCCCGGTTCCTTCAAAGAAACCTCAGAGTCGTCAATGCTACCGGACCAGAAGTTCTCAAATCACAGTATTGCAGGCTCACATGACAAAGAGAGGAGCAGCACTAAAGACCCTATAGTTGTGGGCTATGGCTCGAAGGGTCATAAGATTCATTATTCTGGTCCATTACTGGTTCCTTCCGGTAACATGGACCAAATGTTGAAGGACCACGACCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTTGACAAGGCCAAGGTACGGAAGATTCAAGCTGATGGGAAACAGATATCGACAAATTCATTATTCGTCTCAGGTCGTTAA 2124 45.81 MGCVCCKPSAIEDSKESPRDRVSSKTSSDLRVARLTSSSREEAYRAKDQYDGNDARVTLIDKQVNGSGRLPGENCERKREKMEHMTAQHPSMGRIPKAAEGDHIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNHGILKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSIDPADRGSAALALKSEFFSAKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRLDLQRKDRDSRAVPAPDANAELASSMQKRQGLSSSKSRSEKFNPHPEEASGFPIDPPRPSQGAERMDSQVRHPKKASHSGPLAQRAAWAKASRNPDDPPKISTGTETFATSGLVAARRSMLAEDCREKSDSSQGEVQKLIGRFPGSFKETSESSMLPDQKFSNHSIAGSHDKERSSTKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKIQADGKQISTNSLFVSGR* 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15340938 15347903 + CsaV3_3G019430.1 Csa03g01943 522848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01943 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Csa03g01943 707 MobiDBLite consensus disorder prediction 12 27 - -
Csa03g01943 707 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Csa03g01943 707 SUPERFAMILY Protein kinase-like (PK-like) 125 422 IPR011009 -
Csa03g01943 707 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01943 707 MobiDBLite consensus disorder prediction 603 636 - -
Csa03g01943 707 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Csa03g01943 707 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01943 707 PANTHER CELL DIVISION PROTEIN KINASE 1 689 - -
Csa03g01943 707 MobiDBLite consensus disorder prediction 445 566 - -
Csa03g01943 707 MobiDBLite consensus disorder prediction 1 48 - -
Csa03g01943 707 CDD STKc_CDK9_like 131 415 - -
Csa03g01943 707 MobiDBLite consensus disorder prediction 604 621 - -
Csa03g01943 707 MobiDBLite consensus disorder prediction 445 471 - -
Csa03g01943 707 PANTHER CYCLIN-DEPENDENT KINASE 1 689 - -
Csa03g01943 707 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Csa03g01943 707 MobiDBLite consensus disorder prediction 480 496 - -
Csa03g01943 707 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00572 Csa-Chr1:3682563 Csa03g01943 Csa-Chr3:15340938 0 dispersed
Csa01g02837 Csa-Chr1:24909570 Csa03g01943 Csa-Chr3:15340938 0 dispersed
Csa03g01412 Csa-Chr3:10610724 Csa03g01943 Csa-Chr3:15340938 0 dispersed
Csa03g01943 Csa-Chr3:15340938 Csa06g01089 Csa-Chr6:8991456 0 dispersed
Csa04g01219 Csa-Chr4:10816402 Csa03g01943 Csa-Chr3:15340938 6.56E-105 dispersed
Csa03g01943 Csa-Chr3:15340938 Csa02g00346 Csa-Chr2:2385123 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78000 PF00069 Pkinase 1.00E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01943 - - csv:101222182 1431.0