Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01952 ATGAGATCTCTACTGGTCTCAGAGGTGATGGTGCTTAATCTTCTCAAACCATCTTTATCTTTCCTCGTATGGATATTATTGAGTTCTTTGCTCTCTTTTTCTCTGGGTTTGAAACAGTCTAATCAAATCTGTGATTCAAAAGATTTATTGGCATTGAGGGGCTTTGTGAATAGCCTCGCAAATAATTCTGTTCTCTCTGTTTGGTTAAATGAATCCAACTGCTGCAATTGGGACGGTGTGGATTGTGGATATGATGGCAACAGCTCGATTACTAACAGAGTTACCAAGTTGGAACTGCCTAATTTGAATCTGAAAGGCAAGGTTTCACAATCACTTGGTGGTTTAGATCAGTTAATTTGGCTGAATCTATCATACAATCAGCTTGAAGGTGTATTGCCAACAGAATTCTCAAGCTTGAAGCAACTCCAGGTTTTGGATTTAAGTTACAACAAACTGTCAGGACCAGTCACAAATGCAACTTCAGGATTGATATCTGTTCGTGTTCTGAATATTTCCAGCAATTTATTCGTTGGGGATTTTCCTCAGCTTGTGGGATTTCAAAATCTTGTTGCCTTCAACATAAGTAACAATTCTTTCACAGGCCAGCTTTCATCACAGATTTGCAATTCCTCCAACATGATTCAGTTTGTTGATATTTCACTGAACCAAATATCCGGCAATCTTCGAGGTGTTGACAGTTGCAGCAAATCTCTCAAACATTTCCGTGCAGACAGTAATTTACTTACCGGCCATCTGCCAGGTTCGTTGTATTCATTATCATCCATGGAGTATTTTTCAATTCCTGGGAACAGCTTCTTTGGCCAGTTAAGCATGGAACTGAGTAAGCTTTCTAGGCTTAAATCCTTTATAGTATTTGGAAACAAGTTTTCTGGTGAACTTCCAAATGTATTTGGTAATTTTTCAGAATTAGAGGAGTTAGTTGCACACTCCAACAAGTTCTCTGGATTATTGCCTTCATCTCTGTCATTGTGCTCAAAGCTTAGAGTGTTTGATCTTAGAAATAATTCTTTAACTGGTACTGTAGATCTTAACTTTTCTACGCTACCAGATCTTCAAATGCTTGATCTAGCCTCAAATCACTTTTCCGGCCCTCTACCAAATTCTCTATCTGATTGCCATGAACTGAAAACTCTTAGCCTTGCCAGGAACAAGTTAACTGGTCAAATTCCTCGAGATTATGCAAAGCTCTCCTCTCTGTCGTTTCTATCTTTGTCGAACAACAGTATCATAGATTTGAGTGGTGCACTATCTACTTTACAGAATTGCAAAAACCTCACTGTTCTCATTCTTACAAAGAACTTTCGTAATGAGGAAATCCCACAGAGCGAAACTGTTTTCAACAATTTGATGCTTTTGGCATTTGGTAACTGTGGTCTAAAAGGACAAATTCCAGGTTGGTTAGTTGGTTGCAAGAAACTAAGCATCCTCGACTTGTCTTGGAATCACTTAAATGGAAGTATCCCTGCTTGGATAGGTCAGCTGGAGAATTTGTTTTACTTGGACTTATCCAACAATTCACTGACTGGAGAAATCCCAAAAAGCTTGACACAGATGAAAGCACTAATTTCCAAAAATGGCAGCTTGTCGGGTTCGACATCTTCTGCTGGAATCCCCCTTTTTGTCAAACGAAATCAAAGTGCCACTGGTCTGCAATACAACCAAGCATCAAGCTTTCCACCATCGATTTACTTGAGCTACAACAGAATTAATGGAACTATTTTTCCGGAAATTGGCAGATTAAAATGGCTGCACGTCTTGGATTTGAGTAGGAATAATATTACTGGCTTCATCCCAGGCACCATATCAGAAATGGAGAACTTGGAAACACTAGATTTGTCAAATAATGACCTTTATGGACAAATTCCACCATCACTCAACAAGCTCACATTCTTGTCAAAGTTTAGCGTGGCAAATAATCACTTGGTGGGACCAATTCCTAGTGGAGGGCAATTCTTAAGCTTTCCCAGCTCCAGCTTTGACGGTAATATAGGACTTTGTGGGGAAATTGATAACCCTTGTCACTCTGGTGATGGGTTAGAAACAAAACCCGAAACCAACAAATTTTCAAAGAGAAGAGTCAATTTCATTCTTTGCCTTACAGTCGGTGCAGCTGCAGCAATCCTCCTGCTGCTTACAGTGGTTCTACTCAAAATTTCCAGAAAAGATGTTGGAGATAGACGAAATAATCGTTTTGATGAGGAATTTGACAGGGCTGACAGGTTATCTGGAGCTCTTGGATCGTCAAAGTTGGTGCTCTTTCAGAATTCAGAATGCAAGGATCTTACAGTTGCTGAGTTGTTAAAAGCCACTTGCAATTTCAACCAAGCAAACATAATCGGCTGTGGTGGATTTGGCTTGGTTTACAAAGCCAGCCTTCCCAATGGTTCAAAAGCTGCAGTCAAGAGGCTTACAGGAGATTGTGGTCAAATGGAACGGGAATTCCAAGCTGAAGTAGAAGCTCTTTCTCGAGCGCAGCATAAGAACCTTGTTTCTCTTCAAGGTTATTGCAAACATGGAAATGACAGGCTATTAATTTACTCCTACATGGAAAATGGAAGTTTGGACTATTGGCTTCACGAGGTTGTTGATAATGATTCAATACTAAAATGGGAAACAAGACTCAAAATTGCACAGGGTGCTGCTCACGGATTGGCTTACTTGCATAAGGAATGTCAGCCCAACATAATTCACCGAGATGTAAAATCCAGCAACATACTTCTAGATGACAGATTTGAGGCTCATTTAGCTGATTTTGGTCTTTCACGATTACTCCGTCCGTATGACACTCATGTTACCACGGACTTGGTTGGGACTTTGGGTTATATTCCTCCTGAATACAGCCAGACATTGACTGCAACCTGCAGGGGTGATGTTTACAGTTTTGGCGTTGTTCTCCTTGAGCTTCTTACTGGTCGTAGGCCTGTAGAGGTATGCAAAGGTAAAGCCTGCAGGGATTTGGTGTCTTGGGTGATTCAAAAGAAATCAGAAAAGAGAGAAGAGGAGATTATTGATCCTGCACTTTGGAATACAAATAGCAAAAAACAGATTTTAGAGGTTCTTGGTATTACTTGTAAATGCATAGAACAAGATCCAAGGAAGAGACCTTCGATTGAAGAAGTTTCTTCATGGCTAGATGGTGTAACATCGTAA 3171 40.15 MRSLLVSEVMVLNLLKPSLSFLVWILLSSLLSFSLGLKQSNQICDSKDLLALRGFVNSLANNSVLSVWLNESNCCNWDGVDCGYDGNSSITNRVTKLELPNLNLKGKVSQSLGGLDQLIWLNLSYNQLEGVLPTEFSSLKQLQVLDLSYNKLSGPVTNATSGLISVRVLNISSNLFVGDFPQLVGFQNLVAFNISNNSFTGQLSSQICNSSNMIQFVDISLNQISGNLRGVDSCSKSLKHFRADSNLLTGHLPGSLYSLSSMEYFSIPGNSFFGQLSMELSKLSRLKSFIVFGNKFSGELPNVFGNFSELEELVAHSNKFSGLLPSSLSLCSKLRVFDLRNNSLTGTVDLNFSTLPDLQMLDLASNHFSGPLPNSLSDCHELKTLSLARNKLTGQIPRDYAKLSSLSFLSLSNNSIIDLSGALSTLQNCKNLTVLILTKNFRNEEIPQSETVFNNLMLLAFGNCGLKGQIPGWLVGCKKLSILDLSWNHLNGSIPAWIGQLENLFYLDLSNNSLTGEIPKSLTQMKALISKNGSLSGSTSSAGIPLFVKRNQSATGLQYNQASSFPPSIYLSYNRINGTIFPEIGRLKWLHVLDLSRNNITGFIPGTISEMENLETLDLSNNDLYGQIPPSLNKLTFLSKFSVANNHLVGPIPSGGQFLSFPSSSFDGNIGLCGEIDNPCHSGDGLETKPETNKFSKRRVNFILCLTVGAAAAILLLLTVVLLKISRKDVGDRRNNRFDEEFDRADRLSGALGSSKLVLFQNSECKDLTVAELLKATCNFNQANIIGCGGFGLVYKASLPNGSKAAVKRLTGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHEVVDNDSILKWETRLKIAQGAAHGLAYLHKECQPNIIHRDVKSSNILLDDRFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLTATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRDLVSWVIQKKSEKREEEIIDPALWNTNSKKQILEVLGITCKCIEQDPRKRPSIEEVSSWLDGVTS* 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15396212 15399382 + CsaV3_3G019520.1 Csa03g01952 522857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01952 1056 Pfam Leucine Rich Repeat 503 522 IPR001611 GO:0005515
Csa03g01952 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 42 448 - -
Csa03g01952 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 457 526 - -
Csa03g01952 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 623 1053 - -
Csa03g01952 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 570 627 - -
Csa03g01952 1056 SUPERFAMILY L domain-like 557 673 - -
Csa03g01952 1056 ProSiteProfiles Leucine-rich repeat profile. 405 427 IPR001611 GO:0005515
Csa03g01952 1056 SUPERFAMILY L domain-like 248 526 - -
Csa03g01952 1056 Gene3D Ribonuclease Inhibitor 377 685 IPR032675 -
Csa03g01952 1056 PRINTS Leucine-rich repeat signature 504 517 - -
Csa03g01952 1056 PRINTS Leucine-rich repeat signature 611 624 - -
Csa03g01952 1056 ProSiteProfiles Protein kinase domain profile. 780 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01952 1056 Gene3D Transferase(Phosphotransferase) domain 1 856 1055 - -
Csa03g01952 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 623 1053 - -
Csa03g01952 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 570 627 - -
Csa03g01952 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 457 526 - -
Csa03g01952 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 42 448 - -
Csa03g01952 1056 SUPERFAMILY L domain-like 44 313 - -
Csa03g01952 1056 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Csa03g01952 1056 Pfam Leucine rich repeat 569 624 IPR001611 GO:0005515
Csa03g01952 1056 Gene3D Ribonuclease Inhibitor 304 376 IPR032675 -
Csa03g01952 1056 ProSiteProfiles Leucine-rich repeat profile. 613 636 IPR001611 GO:0005515
Csa03g01952 1056 SMART LRR_typ_2 307 330 IPR003591 -
Csa03g01952 1056 SMART LRR_typ_2 611 635 IPR003591 -
Csa03g01952 1056 SMART LRR_typ_2 139 162 IPR003591 -
Csa03g01952 1056 SMART LRR_typ_2 355 379 IPR003591 -
Csa03g01952 1056 SMART LRR_typ_2 115 138 IPR003591 -
Csa03g01952 1056 SMART LRR_typ_2 587 610 IPR003591 -
Csa03g01952 1056 SMART LRR_typ_2 501 525 IPR003591 -
Csa03g01952 1056 SMART LRR_typ_2 403 426 IPR003591 -
Csa03g01952 1056 ProSitePatterns Protein kinases ATP-binding region signature. 786 808 IPR017441 GO:0005524
Csa03g01952 1056 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672|GO:0006468
Csa03g01952 1056 CDD STKc_IRAK 786 1047 - -
Csa03g01952 1056 Gene3D Ribonuclease Inhibitor 163 231 IPR032675 -
Csa03g01952 1056 Gene3D Ribonuclease Inhibitor 232 303 IPR032675 -
Csa03g01952 1056 Gene3D Ribonuclease Inhibitor 45 162 IPR032675 -
Csa03g01952 1056 Pfam Protein kinase domain 781 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01952 1056 SUPERFAMILY Protein kinase-like (PK-like) 761 1051 IPR011009 -
Csa03g01952 1056 Pfam Leucine rich repeat N-terminal domain 46 82 IPR013210 -
Csa03g01952 1056 Gene3D Phosphorylase Kinase; domain 1 746 855 - -
Csa03g01952 1056 SMART serkin_6 780 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01952 Csa-Chr3:15396212 Csa05g00977 Csa-Chr5:8900193 0 dispersed
Csa06g00506 Csa-Chr6:4282021 Csa03g01952 Csa-Chr3:15396212 2.42E-73 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78001 PF00069 Pkinase 3.10E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01952 - - cmo:103496072 2006.88