Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g01952 | ATGAGATCTCTACTGGTCTCAGAGGTGATGGTGCTTAATCTTCTCAAACCATCTTTATCTTTCCTCGTATGGATATTATTGAGTTCTTTGCTCTCTTTTTCTCTGGGTTTGAAACAGTCTAATCAAATCTGTGATTCAAAAGATTTATTGGCATTGAGGGGCTTTGTGAATAGCCTCGCAAATAATTCTGTTCTCTCTGTTTGGTTAAATGAATCCAACTGCTGCAATTGGGACGGTGTGGATTGTGGATATGATGGCAACAGCTCGATTACTAACAGAGTTACCAAGTTGGAACTGCCTAATTTGAATCTGAAAGGCAAGGTTTCACAATCACTTGGTGGTTTAGATCAGTTAATTTGGCTGAATCTATCATACAATCAGCTTGAAGGTGTATTGCCAACAGAATTCTCAAGCTTGAAGCAACTCCAGGTTTTGGATTTAAGTTACAACAAACTGTCAGGACCAGTCACAAATGCAACTTCAGGATTGATATCTGTTCGTGTTCTGAATATTTCCAGCAATTTATTCGTTGGGGATTTTCCTCAGCTTGTGGGATTTCAAAATCTTGTTGCCTTCAACATAAGTAACAATTCTTTCACAGGCCAGCTTTCATCACAGATTTGCAATTCCTCCAACATGATTCAGTTTGTTGATATTTCACTGAACCAAATATCCGGCAATCTTCGAGGTGTTGACAGTTGCAGCAAATCTCTCAAACATTTCCGTGCAGACAGTAATTTACTTACCGGCCATCTGCCAGGTTCGTTGTATTCATTATCATCCATGGAGTATTTTTCAATTCCTGGGAACAGCTTCTTTGGCCAGTTAAGCATGGAACTGAGTAAGCTTTCTAGGCTTAAATCCTTTATAGTATTTGGAAACAAGTTTTCTGGTGAACTTCCAAATGTATTTGGTAATTTTTCAGAATTAGAGGAGTTAGTTGCACACTCCAACAAGTTCTCTGGATTATTGCCTTCATCTCTGTCATTGTGCTCAAAGCTTAGAGTGTTTGATCTTAGAAATAATTCTTTAACTGGTACTGTAGATCTTAACTTTTCTACGCTACCAGATCTTCAAATGCTTGATCTAGCCTCAAATCACTTTTCCGGCCCTCTACCAAATTCTCTATCTGATTGCCATGAACTGAAAACTCTTAGCCTTGCCAGGAACAAGTTAACTGGTCAAATTCCTCGAGATTATGCAAAGCTCTCCTCTCTGTCGTTTCTATCTTTGTCGAACAACAGTATCATAGATTTGAGTGGTGCACTATCTACTTTACAGAATTGCAAAAACCTCACTGTTCTCATTCTTACAAAGAACTTTCGTAATGAGGAAATCCCACAGAGCGAAACTGTTTTCAACAATTTGATGCTTTTGGCATTTGGTAACTGTGGTCTAAAAGGACAAATTCCAGGTTGGTTAGTTGGTTGCAAGAAACTAAGCATCCTCGACTTGTCTTGGAATCACTTAAATGGAAGTATCCCTGCTTGGATAGGTCAGCTGGAGAATTTGTTTTACTTGGACTTATCCAACAATTCACTGACTGGAGAAATCCCAAAAAGCTTGACACAGATGAAAGCACTAATTTCCAAAAATGGCAGCTTGTCGGGTTCGACATCTTCTGCTGGAATCCCCCTTTTTGTCAAACGAAATCAAAGTGCCACTGGTCTGCAATACAACCAAGCATCAAGCTTTCCACCATCGATTTACTTGAGCTACAACAGAATTAATGGAACTATTTTTCCGGAAATTGGCAGATTAAAATGGCTGCACGTCTTGGATTTGAGTAGGAATAATATTACTGGCTTCATCCCAGGCACCATATCAGAAATGGAGAACTTGGAAACACTAGATTTGTCAAATAATGACCTTTATGGACAAATTCCACCATCACTCAACAAGCTCACATTCTTGTCAAAGTTTAGCGTGGCAAATAATCACTTGGTGGGACCAATTCCTAGTGGAGGGCAATTCTTAAGCTTTCCCAGCTCCAGCTTTGACGGTAATATAGGACTTTGTGGGGAAATTGATAACCCTTGTCACTCTGGTGATGGGTTAGAAACAAAACCCGAAACCAACAAATTTTCAAAGAGAAGAGTCAATTTCATTCTTTGCCTTACAGTCGGTGCAGCTGCAGCAATCCTCCTGCTGCTTACAGTGGTTCTACTCAAAATTTCCAGAAAAGATGTTGGAGATAGACGAAATAATCGTTTTGATGAGGAATTTGACAGGGCTGACAGGTTATCTGGAGCTCTTGGATCGTCAAAGTTGGTGCTCTTTCAGAATTCAGAATGCAAGGATCTTACAGTTGCTGAGTTGTTAAAAGCCACTTGCAATTTCAACCAAGCAAACATAATCGGCTGTGGTGGATTTGGCTTGGTTTACAAAGCCAGCCTTCCCAATGGTTCAAAAGCTGCAGTCAAGAGGCTTACAGGAGATTGTGGTCAAATGGAACGGGAATTCCAAGCTGAAGTAGAAGCTCTTTCTCGAGCGCAGCATAAGAACCTTGTTTCTCTTCAAGGTTATTGCAAACATGGAAATGACAGGCTATTAATTTACTCCTACATGGAAAATGGAAGTTTGGACTATTGGCTTCACGAGGTTGTTGATAATGATTCAATACTAAAATGGGAAACAAGACTCAAAATTGCACAGGGTGCTGCTCACGGATTGGCTTACTTGCATAAGGAATGTCAGCCCAACATAATTCACCGAGATGTAAAATCCAGCAACATACTTCTAGATGACAGATTTGAGGCTCATTTAGCTGATTTTGGTCTTTCACGATTACTCCGTCCGTATGACACTCATGTTACCACGGACTTGGTTGGGACTTTGGGTTATATTCCTCCTGAATACAGCCAGACATTGACTGCAACCTGCAGGGGTGATGTTTACAGTTTTGGCGTTGTTCTCCTTGAGCTTCTTACTGGTCGTAGGCCTGTAGAGGTATGCAAAGGTAAAGCCTGCAGGGATTTGGTGTCTTGGGTGATTCAAAAGAAATCAGAAAAGAGAGAAGAGGAGATTATTGATCCTGCACTTTGGAATACAAATAGCAAAAAACAGATTTTAGAGGTTCTTGGTATTACTTGTAAATGCATAGAACAAGATCCAAGGAAGAGACCTTCGATTGAAGAAGTTTCTTCATGGCTAGATGGTGTAACATCGTAA | 3171 | 40.15 | MRSLLVSEVMVLNLLKPSLSFLVWILLSSLLSFSLGLKQSNQICDSKDLLALRGFVNSLANNSVLSVWLNESNCCNWDGVDCGYDGNSSITNRVTKLELPNLNLKGKVSQSLGGLDQLIWLNLSYNQLEGVLPTEFSSLKQLQVLDLSYNKLSGPVTNATSGLISVRVLNISSNLFVGDFPQLVGFQNLVAFNISNNSFTGQLSSQICNSSNMIQFVDISLNQISGNLRGVDSCSKSLKHFRADSNLLTGHLPGSLYSLSSMEYFSIPGNSFFGQLSMELSKLSRLKSFIVFGNKFSGELPNVFGNFSELEELVAHSNKFSGLLPSSLSLCSKLRVFDLRNNSLTGTVDLNFSTLPDLQMLDLASNHFSGPLPNSLSDCHELKTLSLARNKLTGQIPRDYAKLSSLSFLSLSNNSIIDLSGALSTLQNCKNLTVLILTKNFRNEEIPQSETVFNNLMLLAFGNCGLKGQIPGWLVGCKKLSILDLSWNHLNGSIPAWIGQLENLFYLDLSNNSLTGEIPKSLTQMKALISKNGSLSGSTSSAGIPLFVKRNQSATGLQYNQASSFPPSIYLSYNRINGTIFPEIGRLKWLHVLDLSRNNITGFIPGTISEMENLETLDLSNNDLYGQIPPSLNKLTFLSKFSVANNHLVGPIPSGGQFLSFPSSSFDGNIGLCGEIDNPCHSGDGLETKPETNKFSKRRVNFILCLTVGAAAAILLLLTVVLLKISRKDVGDRRNNRFDEEFDRADRLSGALGSSKLVLFQNSECKDLTVAELLKATCNFNQANIIGCGGFGLVYKASLPNGSKAAVKRLTGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHEVVDNDSILKWETRLKIAQGAAHGLAYLHKECQPNIIHRDVKSSNILLDDRFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLTATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRDLVSWVIQKKSEKREEEIIDPALWNTNSKKQILEVLGITCKCIEQDPRKRPSIEEVSSWLDGVTS* | 1057 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 15396212 | 15399382 | + | CsaV3_3G019520.1 | Csa03g01952 | 522857 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g01952 | 1056 | Pfam | Leucine Rich Repeat | 503 | 522 | IPR001611 | GO:0005515 | |
Csa03g01952 | 1056 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 42 | 448 | - | - | |
Csa03g01952 | 1056 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 457 | 526 | - | - | |
Csa03g01952 | 1056 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 623 | 1053 | - | - | |
Csa03g01952 | 1056 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 570 | 627 | - | - | |
Csa03g01952 | 1056 | SUPERFAMILY | L domain-like | 557 | 673 | - | - | |
Csa03g01952 | 1056 | ProSiteProfiles | Leucine-rich repeat profile. | 405 | 427 | IPR001611 | GO:0005515 | |
Csa03g01952 | 1056 | SUPERFAMILY | L domain-like | 248 | 526 | - | - | |
Csa03g01952 | 1056 | Gene3D | Ribonuclease Inhibitor | 377 | 685 | IPR032675 | - | |
Csa03g01952 | 1056 | PRINTS | Leucine-rich repeat signature | 504 | 517 | - | - | |
Csa03g01952 | 1056 | PRINTS | Leucine-rich repeat signature | 611 | 624 | - | - | |
Csa03g01952 | 1056 | ProSiteProfiles | Protein kinase domain profile. | 780 | 1051 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g01952 | 1056 | Gene3D | Transferase(Phosphotransferase) domain 1 | 856 | 1055 | - | - | |
Csa03g01952 | 1056 | PANTHER | PHYTOSULFOKINE RECEPTOR 2 | 623 | 1053 | - | - | |
Csa03g01952 | 1056 | PANTHER | PHYTOSULFOKINE RECEPTOR 2 | 570 | 627 | - | - | |
Csa03g01952 | 1056 | PANTHER | PHYTOSULFOKINE RECEPTOR 2 | 457 | 526 | - | - | |
Csa03g01952 | 1056 | PANTHER | PHYTOSULFOKINE RECEPTOR 2 | 42 | 448 | - | - | |
Csa03g01952 | 1056 | SUPERFAMILY | L domain-like | 44 | 313 | - | - | |
Csa03g01952 | 1056 | Pfam | Leucine rich repeat | 93 | 152 | IPR001611 | GO:0005515 | |
Csa03g01952 | 1056 | Pfam | Leucine rich repeat | 569 | 624 | IPR001611 | GO:0005515 | |
Csa03g01952 | 1056 | Gene3D | Ribonuclease Inhibitor | 304 | 376 | IPR032675 | - | |
Csa03g01952 | 1056 | ProSiteProfiles | Leucine-rich repeat profile. | 613 | 636 | IPR001611 | GO:0005515 | |
Csa03g01952 | 1056 | SMART | LRR_typ_2 | 307 | 330 | IPR003591 | - | |
Csa03g01952 | 1056 | SMART | LRR_typ_2 | 611 | 635 | IPR003591 | - | |
Csa03g01952 | 1056 | SMART | LRR_typ_2 | 139 | 162 | IPR003591 | - | |
Csa03g01952 | 1056 | SMART | LRR_typ_2 | 355 | 379 | IPR003591 | - | |
Csa03g01952 | 1056 | SMART | LRR_typ_2 | 115 | 138 | IPR003591 | - | |
Csa03g01952 | 1056 | SMART | LRR_typ_2 | 587 | 610 | IPR003591 | - | |
Csa03g01952 | 1056 | SMART | LRR_typ_2 | 501 | 525 | IPR003591 | - | |
Csa03g01952 | 1056 | SMART | LRR_typ_2 | 403 | 426 | IPR003591 | - | |
Csa03g01952 | 1056 | ProSitePatterns | Protein kinases ATP-binding region signature. | 786 | 808 | IPR017441 | GO:0005524 | |
Csa03g01952 | 1056 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 902 | 914 | IPR008271 | GO:0004672|GO:0006468 | |
Csa03g01952 | 1056 | CDD | STKc_IRAK | 786 | 1047 | - | - | |
Csa03g01952 | 1056 | Gene3D | Ribonuclease Inhibitor | 163 | 231 | IPR032675 | - | |
Csa03g01952 | 1056 | Gene3D | Ribonuclease Inhibitor | 232 | 303 | IPR032675 | - | |
Csa03g01952 | 1056 | Gene3D | Ribonuclease Inhibitor | 45 | 162 | IPR032675 | - | |
Csa03g01952 | 1056 | Pfam | Protein kinase domain | 781 | 1048 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g01952 | 1056 | SUPERFAMILY | Protein kinase-like (PK-like) | 761 | 1051 | IPR011009 | - | |
Csa03g01952 | 1056 | Pfam | Leucine rich repeat N-terminal domain | 46 | 82 | IPR013210 | - | |
Csa03g01952 | 1056 | Gene3D | Phosphorylase Kinase; domain 1 | 746 | 855 | - | - | |
Csa03g01952 | 1056 | SMART | serkin_6 | 780 | 1051 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01952 | Csa-Chr3:15396212 | Csa05g00977 | Csa-Chr5:8900193 | 0 | dispersed | |
Csa06g00506 | Csa-Chr6:4282021 | Csa03g01952 | Csa-Chr3:15396212 | 2.42E-73 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78001 | PF00069 | Pkinase | 3.10E-44 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g01952 | - | - | cmo:103496072 | 2006.88 |