Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01966 ATGGAAAAATTGCCAACCGAAATCTGCTTCAAGATTTTCTGTTTCTTGGATTCCCAGAACCTTGCAACCGCACTTCAAGTTTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTGTGGTCAAATTTATTCAAGGAGAGGTGGGGAGAAGACCATGCTGCATTTTATCACCCAATTGGTTCAAAGTCATGGAAGGATTCATATGAGGTGCAAGATCGATGTGATCGATTTGGACTGGGCCTAAGAATTATCCGAGAAGGGAATGACTACTATCTCATTCACCAAGGTGAAATCCAGAGGCACCTAGGTTCAAGAAGACAAAAGAATGGACAGACCAGTTTTCTTCCTTTGAGTTCGAAAAGAGAGTTCCTATCAGAAGGACTTCTCGAAGAAGACAAATCCTGTCGAGGAATTCTGGACAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCCACAGATGCAAAGCGTAGCAGGTCTCTGTGA 492 43.09 MEKLPTEICFKIFCFLDSQNLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPIGSKSWKDSYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSSKREFLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRSL* 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15527446 15529563 - CsaV3_3G019660.1 Csa03g01966 522871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01966 163 Pfam F-box-like 2 45 IPR001810 GO:0005515
Csa03g01966 163 ProSiteProfiles F-box domain profile. 1 44 IPR001810 GO:0005515
Csa03g01966 163 PANTHER OS02G0686500 PROTEIN 1 162 - -
Csa03g01966 163 SUPERFAMILY F-box domain 2 73 IPR036047 GO:0005515
Csa03g01966 163 Gene3D - 1 78 - -
Csa03g01966 163 PANTHER F-BOX ONLY PROTEIN 48-RELATED 1 162 IPR045118 GO:0019005|GO:0031146
Csa03g01966 163 SMART fbox_2 4 44 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01966 - - - csv:101219018 338.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01966 Csa-Chr3:15527446 Csa04g01764 Csa-Chr4:17350623 3.24E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g999 . . . Bda07g01947 Bpe03g00202 . . . Cmo16g00037 . . . . . Sed07g0875 . . Bhi01g01518 Tan01g0062 Cmetu06g0118 . Hepe07g0040 Mch10g0038 . . . . . . . . . . . . . . . Cme06g01168 . . . . . . . . . . . Cma16g00032 . Car16g00030 . . . . . . . . . . . . . . . . . . Csa03g01966 Chy06g01177 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014793 1 1 0 0 1 0 1 1 1 0 0 0 1 1 1 1 0 0 0 0 1 1 1 1 0 0 1 1 1 1 18