Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01967 ATGTCGGACGCTTATTGGAGGTATACCGACTCTCAGCAGCAGCCTCCGTCCTCGGTTCCGCCCGTCGTCGGCAAGCGCCCTCGCGTCGATTACGATACCTCTGGTCTTCACGAGCTGCCCAACTATTATCCTCGTCAAGATGATAGGCCTGTTCTCCAAGGAATTAAAAGTGTTGACTCTATCAATGAGTCCTATGAACGTTACCTACGCACCTCGCAAATTTCATCTTATGGTGGACAGTCTGCTAGACCTGTTGGTGGGGGCGTTCCTGGTCATCCGATGAATGATCCACCTATCTTGGGGCTTGGGGGGGTGGTTTCAGGGGCAAATGTTAATGATAGAAGTACGAGCTTTGGAGGTGGGAGGCCTAATATGCCCCTGCCACCTGATGCTTCTAATACACTATTTGTGGAAGGCTTGCCTTCCAGCTGTACCCGGCGTGAAGTAGCTCACATATTTCGTCCTTTTGTTGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAGTGCTGGAAGAGATCCAGTGGTGCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCCATGGATGCCTTACAAGGTTATAAATTCGATGAGTTTGACCGCGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGTCAGGTGGCGGGCATCGTGGAAAGCGTTGA 699 50.36 MSDAYWRYTDSQQQPPSSVPPVVGKRPRVDYDTSGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRTSQISSYGGQSARPVGGGVPGHPMNDPPILGLGGVVSGANVNDRSTSFGGGRPNMPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRSAGRDPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLRLQFARFPGARSGGGHRGKR* 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15531249 15540846 - CsaV3_3G019670.1 Csa03g01967 522872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01967 232 MobiDBLite consensus disorder prediction 1 19 - -
Csa03g01967 232 PANTHER PROTEIN MATERNALLY EXPRESSED GENE 5 13 232 - -
Csa03g01967 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 203 IPR000504 GO:0003723
Csa03g01967 232 MobiDBLite consensus disorder prediction 1 27 - -
Csa03g01967 232 CDD RRM_RBPMS_like 133 215 - -
Csa03g01967 232 Gene3D - 129 219 IPR012677 -
Csa03g01967 232 SUPERFAMILY RNA-binding domain, RBD 118 227 IPR035979 GO:0003676
Csa03g01967 232 SMART rrm1_1 134 211 IPR000504 GO:0003723
Csa03g01967 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 219 IPR000504 GO:0003723
Csa03g01967 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 13 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01967 - - - csv:101218789 461.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01967 Csa-Chr3:15531249 Csa06g01890 Csa-Chr6:17060904 9.27E-46 dispersed
Csa03g01967 Csa-Chr3:15531249 Csa06g01880 Csa-Chr6:16959599 4.50E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1004 . . . Bda07g01945 Bpe03g00200 . . . Cmo16g00039 . . . . . . . Cpe14g00026 Bhi01g01516 Tan01g0067 . . Hepe07g0042 Mch10g0042 . . . . . . . . Cone1ag1002 Cone5ag0710 . . . . . Cme06g01167 . Blo09g00014 . . . . . . . . . Cma16g00033 . Car16g00032 . . . . . . . . . . Cla05g00986 Cam05g1077 Cec05g1085 Cco05g1079 Clacu05g1071 . . . Csa03g01967 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010365 1 3 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 4 1 32