Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01972 ATGGCTTTGCTGAGTCCTCGATTGCATAGATTCCGGCTAACTAAGCTTCACCATGTCTCCGCCTCCAAACCCACCAAAGCAACTAAGCTCACTCTCAGAAAAAATTCCAGATGCTGCTCTGCCATAGCTATTGATGCTCCATCTTCTTTAACAGATGCTGCGGGAATAAGATGGGGTTCCACTACTTTTCAAGGCTTGCGGGAGGAAATGGAAGACGATGCTGTTGTGCGGTCTGATGGTTTCAATGACTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCTATTCCTCTGTCAAGTTCCTAAGGGAGGAGCTGTACAAAGACTGCGTGGCAGCCTTGCAGGGCGGCCAACTATTGAATGGAGGGGATTTTGAAGTGATAAAAGCGGCTTTAGAGAAGGCTTTTGATGATACTGATAAGAGACTACTCCTATTGCTTGAGGCAGCTGGGGAGGAAGATGAATCTGGTGCCACTGCAACCGTTGCATTCATTCGAAATGATGTGCTGTTCATTTCACATCTTGGTGACTCTTGTGTTGTGTTATCTCGTTCTGGAGGAGCACAGGTGTTGACTAGTTCTCATCGGCCTTATGGAAATAACAGCACATCACTGCAAGAGATTAGAAGAATTAGAGAAGCAGGTGGATGGATTGTTAATGGGAGAATCTGTGGGGACATCTCTGTATCACGTGCATTTGGTGACATACGATTCAAGACAAAGAAAAGCGAGATGCTACAGAAAGGAGTTGAAGAAGGAAGATGGTCAGAAAAATTTATTTCTCGTGTACAGTTCAATGGAGATTTGGTTACTGCATCACCAGAAATTTTCCAAGTCACACTCGGATCAAATGCCGAGTTTGTACTGATGGCATCGGATGGCCTATGGGATTACATGAATAGCTCTGATGCGGTTATGTTTGTTCGGAATGAACTTAGACAGCATGGCGACGTTCAGCTAGCTTGTGAAGCCCTCGCCCAAGCAGCCTTGGACAAAGGGTCACAAGACAATGTCAGCATTATCATGGCTGATTTAGGGCGGACAGATTGGCAAAATTTGCCCCTTCAGCAAGACAATGTCATATTTGAACTGGCTCAAGCTTTGGCTACGATGGGACTCGTTTCTTTAGGTATTTGGTGGGCATCCTCTAGTTTCTCTCTTTAA 1164 45.53 MALLSPRLHRFRLTKLHHVSASKPTKATKLTLRKNSRCCSAIAIDAPSSLTDAAGIRWGSTTFQGLREEMEDDAVVRSDGFNDFLFAAVFDGHGGYSSVKFLREELYKDCVAALQGGQLLNGGDFEVIKAALEKAFDDTDKRLLLLLEAAGEEDESGATATVAFIRNDVLFISHLGDSCVVLSRSGGAQVLTSSHRPYGNNSTSLQEIRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKSEMLQKGVEEGRWSEKFISRVQFNGDLVTASPEIFQVTLGSNAEFVLMASDGLWDYMNSSDAVMFVRNELRQHGDVQLACEALAQAALDKGSQDNVSIIMADLGRTDWQNLPLQQDNVIFELAQALATMGLVSLGIWWASSSFSL* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15565173 15570677 - CsaV3_3G019720.1 Csa03g01972 522877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01972 387 Gene3D - 56 351 IPR036457 -
Csa03g01972 387 SUPERFAMILY PP2C-like 54 346 IPR036457 -
Csa03g01972 387 CDD PP2Cc 56 345 IPR001932 -
Csa03g01972 387 Pfam Protein phosphatase 2C 59 338 IPR001932 -
Csa03g01972 387 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Csa03g01972 387 PANTHER PROTEIN PHOSPHATASE 2C 57 6 382 - -
Csa03g01972 387 PANTHER PROTEIN PHOSPHATASE 2C 6 382 IPR015655 GO:0004722|GO:0006470
Csa03g01972 387 ProSiteProfiles PPM-type phosphatase domain profile. 57 345 IPR001932 -
Csa03g01972 387 SMART PP2C_4 47 343 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01972 Csa-Chr3:15565173 Csa02g00258 Csa-Chr2:1753627 3.90E-30 dispersed
Csa03g01972 Csa-Chr3:15565173 Csa03g02203 Csa-Chr3:19119262 8.62E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01972 K04457 - csv:101218076 744.577