Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01980 ATGATGGATGAGAAAGAGGTTTCCAATTCACTAACATTCATCTCTGAAGAGAAAATTGACAGTTTATCTCCTATGTATTTTGGCGTCTCTTGCGCATTCTTTGCACTTCGACTCTTGTCGACCTCTGATTGCAAAGACGAGAAATGGTCTGAAGTTCGGGAAAAGATGCTTCAAGGAAGCGCCCAACTCTTGGGATTGCTAATATGGAGTGCTCAGAGGGAGGTGGATAGGCAAAAGCCCAACCTTCATCATAAGCTTGAGGCTGCTGAGAGAGAGATAGGAGAGTTGAAAAGGATCAGACATGAAGATGCTAAAGCTAATGAAAAAGTTGTTTGCATCTTTGCTGCTCAGGAGCAACGGTGGTTGATTGAAAGGAGGAAGCTTCGCCAACACATTGGGGGTTTAATGAACGATGCAAGACTACTCGAAAAGAAGGAAGGAGTTATTTCTGAACTGAATGAAAAGTTGAAAGAGATGGAGATGACTCTAGAGTCTAAGGAAAAACAATTGGAGGAAGAGATTAGAAAGGGAAGTGATTTAGAAGAAAGACTGTCAAAGGCTGAAAATGTAGTAGAAGAATTGAGAGAAACTGCTAAACGTGAGGCCCAAGAGCATTCCTCTGAACTCTGGAAGCACAAAACAGCCTTCATTGAGCTGGTCTCAAACCAAAGGCAACTCGAAGCTGAGATGGCCCGAGCAGTTAGGCAAGTTGAAGCATCAAAAGGAGAGCTTGATTCAGTTTTAGAGCAAAAGGAGGAGTCCGTAATGTTGGTTCAGAAACTATCAGCCGAGATTGTTAAAATGCGCAAGGATTTAGAACAGAAAGACAAGATCTTGTCAGCAATGCTGAGAAAATCCAAGCTGGATACAGCACAGAAGCAAATGCTCCTTAAGGAGGTTAAGCTATCCAAAGCTAGGAGGAAGCAAGCAGAACTAGAAGCTGAAAGGTGGAAGACAATTTCAGAATCAAGACATGAAAGACAGTCTTTGAGAAGTATGTTATCCAATCAGGCCAATTCAGGAAACGATGTTCCTACAAGTGCTGAGGACAAGCATTCAAATACTAGCGCCTTTTCAAATACGGGGAAGACCGTATCGAAGCCAACCGATATTTATATAGATTACAATCATTCTGAATCCATTGAGTCAAAAAATTTCCCTCCCCTTGCTGAATCAGAATGTCTTTCCCCTGAAAGAAATGGTGACTCAGGGAGAATGATTGACGTGAAGCAGATGGAAGAGTTGGTATGCTCTGAGGCAGAAAAATATGTATTAATACTTCAGCAAAGACATGACCTAGAAATAGATGCGTTTGCAGAGCAAATGGGGGTGAAAGATGAAAAATTAGAAGTTTTTCACTGGCAGATGCTCAACTTGGAACTCGAGTCAAAACGGCTTCAGTCACATCTTTCTGGACAGAATCAAGAAATTTTGCAGCTTAGGCATGAGAATATGAAATTAAAAGCTCTGTCAATGGAGAGAGAAGAGGAATTAGCTTCCTTGAAAGACCAACTGGCATCACAGTTCAAAGCTCAAAGGTACCAGTCTCCAAAATGGGTGCCAGATGAAAACAATGGCACGTGGTCTGATGTCAAGATTATAAAGATAAAACCAGGAGAAGAAGAGCAACAAAGAAATAAAGATTCTGTTGGAACAATAAGAGAGGATGCTGTTGAGAGAGAAGAGACTGCTCCCTCAAACCACGTTGAGGATAGAAATCCATCTATACAATCTCCAGGTACAGAATTTGAAGATGAGAAAGAAATTCCTTGTCACAGTCCTATTCAAGAAGCAAGCCCAAACAGTCCACAGGGAGTTGATAATGCCGAACCGTTGGCATCGATTGGGCAGCAGTTTGGAAGAACTTACAGTGCTCAATGGAGGATGGATATTCATGCTCTAGGAGTGTCTTACAAAATCAAAAGACTGAAGCAGCAATTTCTTCTACTTGAGAGGCTCGTTGGAAAACAAGAAACTGCTCGGAATTCCGAAAATGAGGATAATGGACAAGTTGGCATTAGAGACTTTCTTTTGTTTCTGACACTGCTGAATAAACAAGTGGGAAGATATAATTCTCTGCAGGAGAAAACTGATGAACTCTGCCAAAGGATGCATGATTACGAAGCAAGTGTAAAAAGTGGAGAGTCTAAAGTAGTTAGAACAAAAGGGAAAACCAAAGCGCTAGAGAACTTCCTTGAACAGACATTTCAACTACAAAGATACGTTGTCTTAACAGGACAAAAATGGATGGAAATTCAATCCAAGATCAGCCTGGAGTTCGCCAAGGTCGCTGATGAACTTCAAAAGTCTGGTAGCTTTGACGTCATGCGCTTTGCCAGTAGTGTTAGAACTCTCCTCCAAGAAGTTCAAAGAGGTCTAGAAGTTCGAATAACTCGAATTATCGGAGATCTAGAAGGAACCTTGGCATGCGAGGGTATGATTTGTCTAAGTAGATAG 2457 41.51 MMDEKEVSNSLTFISEEKIDSLSPMYFGVSCAFFALRLLSTSDCKDEKWSEVREKMLQGSAQLLGLLIWSAQREVDRQKPNLHHKLEAAEREIGELKRIRHEDAKANEKVVCIFAAQEQRWLIERRKLRQHIGGLMNDARLLEKKEGVISELNEKLKEMEMTLESKEKQLEEEIRKGSDLEERLSKAENVVEELRETAKREAQEHSSELWKHKTAFIELVSNQRQLEAEMARAVRQVEASKGELDSVLEQKEESVMLVQKLSAEIVKMRKDLEQKDKILSAMLRKSKLDTAQKQMLLKEVKLSKARRKQAELEAERWKTISESRHERQSLRSMLSNQANSGNDVPTSAEDKHSNTSAFSNTGKTVSKPTDIYIDYNHSESIESKNFPPLAESECLSPERNGDSGRMIDVKQMEELVCSEAEKYVLILQQRHDLEIDAFAEQMGVKDEKLEVFHWQMLNLELESKRLQSHLSGQNQEILQLRHENMKLKALSMEREEELASLKDQLASQFKAQRYQSPKWVPDENNGTWSDVKIIKIKPGEEEQQRNKDSVGTIREDAVEREETAPSNHVEDRNPSIQSPGTEFEDEKEIPCHSPIQEASPNSPQGVDNAEPLASIGQQFGRTYSAQWRMDIHALGVSYKIKRLKQQFLLLERLVGKQETARNSENEDNGQVGIRDFLLFLTLLNKQVGRYNSLQEKTDELCQRMHDYEASVKSGESKVVRTKGKTKALENFLEQTFQLQRYVVLTGQKWMEIQSKISLEFAKVADELQKSGSFDVMRFASSVRTLLQEVQRGLEVRITRIIGDLEGTLACEGMICLSR* 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15612223 15615069 - CsaV3_3G019800.1 Csa03g01980 522885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01980 818 Coils Coil 258 278 - -
Csa03g01980 818 PANTHER RIBONUCLEASE P PROTEIN SUBUNIT P38-LIKE PROTEIN 2 817 - -
Csa03g01980 818 Coils Coil 142 204 - -
Csa03g01980 818 Coils Coil 484 504 - -
Csa03g01980 818 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Csa03g01980 818 MobiDBLite consensus disorder prediction 330 363 - -
Csa03g01980 818 Coils Coil 223 243 - -
Csa03g01980 818 Coils Coil 288 315 - -
Csa03g01980 818 MobiDBLite consensus disorder prediction 321 363 - -
Csa03g01980 818 MobiDBLite consensus disorder prediction 535 568 - -
Csa03g01980 818 PANTHER RIBONUCLEASE P PROTEIN SUBUNIT P38-LIKE PROTEIN 2 817 - -
Csa03g01980 818 MobiDBLite consensus disorder prediction 535 610 - -
Csa03g01980 818 Coils Coil 690 710 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01980 - - - csv:101206875 1593.56
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1034 . . Bda05g00127 Bda07g01937 Bpe03g00231 . Bma10g01304 Bma14g02010 Cmo16g00050 . . . . . . . Cpe14g00035 Bhi01g01496 Tan01g0088 . . . . . . . . . . . . Cone1ag0989 . Cone14ag0007 . . . . Cme06g01147 Blo07g00332 Blo09g00023 . . . . . . . . . Cma16g00041 . . Car18g01242 . . . . . . . . . . . . . . . . . Csa03g01980 Chy06g01195 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004185 2 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 43