Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01989 ATGGATTTGGATAGTATTGAGTGTGTTTCATCTTCAGATGGTCTTGATGAAGATGAGATCCATCTGCATCACACTCTTCATCCTTATTCTCTTTCTCACCATCATCCAGAGTTGTCAGCGACGAAGCCTCGTAATGGAAGCAATAATAGCGGTATAGCAGTCCCCACTGCGACTGCACCCGCTACTAGCGTCCATGAATTGCTTGAGTGCCCTGTTTGTACCAATTCTATGTACCCTCCCATTCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCCTAGCATTGGAGAAGGTGGCAGAATCACTTGAATTGCCTTGCAAGTATTATTCGTTGGGGTGCACTGAGATATTCCCATACTACAGTAAGCTTAAGCATGAGGCATTGTGCAACTATAGACCCTATAGTTGCCCATACGCTGGGTCAGAATGCTCTGCTGTTGGGGATATTCCTTTCCTTGTTGCCCATCTCAGGGATGACCATAAGGTGGACATGCACACTGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCTACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGGATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGCGATGAGAACGATGCACGGACATACAGCTACAGTCTTGAGGTCGGTGGATACGGGCGAAAACTAATATGGGAGGGCACCCCACGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGACTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAATTGAAACTTAGAGTTACGGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGGGTATGCATACCGAACCTGTGTAGCTAA 996 45.48 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSLSHHHPELSATKPRNGSNNSGIAVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15655856 15659507 + CsaV3_3G019890.1 Csa03g01989 522894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01989 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270
Csa03g01989 331 MobiDBLite consensus disorder prediction 41 55 - -
Csa03g01989 331 CDD RING-HC_SIAHs 68 106 - -
Csa03g01989 331 CDD Sina 184 312 - -
Csa03g01989 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 176 IPR013083 -
Csa03g01989 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Csa03g01989 331 Pfam Seven in absentia protein family 112 311 IPR018121 GO:0005737|GO:0006511|GO:0007275
Csa03g01989 331 SUPERFAMILY TRAF domain-like 123 315 - -
Csa03g01989 331 MobiDBLite consensus disorder prediction 31 55 - -
Csa03g01989 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 112 IPR013083 -
Csa03g01989 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 323 - -
Csa03g01989 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 323 - -
Csa03g01989 331 SUPERFAMILY RING/U-box 57 109 - -
Csa03g01989 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01770 Csa-Chr3:13285926 Csa03g01989 Csa-Chr3:15655856 6.77E-25 dispersed
Csa03g01989 Csa-Chr3:15655856 Csa06g00720 Csa-Chr6:5872376 2.08E-179 dispersed
Csa03g01989 Csa-Chr3:15655856 Csa03g01990 Csa-Chr3:15666843 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01989 K04506 - csv:101215696 705.286