Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01990 ATGGATTTGGATAGTATCGAGTGTGTATCGTCTTCTGATGGTCTCGATGAGGATGAGATTCATCTGCACCACACCCTTCATCCTTATTCCCAATCTCATCATCATCCCGAGTTGTCCGCATCTAAGCCTCGTTATGGAAACAATAATAGCGCTGTGAACGGTGGTCCCACTGCAACTGCGCCGGCAACTAACGTTCATGAATTGCTGGAATGCCCTGTGTGTACTAATTCTATGTACCCTCCCATCCATCAGTGCCACAACGGACATACCTTATGTTCCACATGTAAAACGAGAGTTCATAACCGGTGCCCAACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTGGCACTGGAGAAGGTGGCAGAGTCACTTGAATTGCCTTGCAAGTATTATTCATTGGGTTGCACTGAGATATTTCCATACTACAGTAAACTTAAGCATGAGGGTTTGTGCAACTACAGACCCTATAGTTGTCCATATGCTGGGTCAGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGACATGCACACTGGCTGCACATTTAACCATCGCTATGTTAAGTCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAGGCTTTTCAGCTCGGCATGGCTCCAGTCTACATGGCTTTCCTCCGTTTCATGGGCGATGAGAATGACGCCCGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTATTAGAGATAGTCATCGAAAAGTTAGGGACAGCCATGATGGATTAATTATCCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGAAAGGAACTGAAGCTGAGGGTTACAGGAAGGATATGGAAGGAACAAAACCCGGATGCTGGTGTTTGCATACCAAACCTTTGTAGCTAA 999 45.75 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSQSHHHPELSASKPRYGNNNSAVNGGPTATAPATNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEGLCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15666843 15670345 + CsaV3_3G019900.1 Csa03g01990 522895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01990 332 MobiDBLite consensus disorder prediction 28 59 - -
Csa03g01990 332 CDD Sina 185 313 - -
Csa03g01990 332 ProSiteProfiles Zinc finger SIAH-type profile. 124 184 IPR013010 GO:0008270
Csa03g01990 332 SUPERFAMILY RING/U-box 58 110 - -
Csa03g01990 332 SUPERFAMILY TRAF domain-like 124 316 - -
Csa03g01990 332 ProSiteProfiles Zinc finger RING-type profile. 71 107 IPR001841 -
Csa03g01990 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 177 IPR013083 -
Csa03g01990 332 CDD RING-HC_SIAHs 69 107 - -
Csa03g01990 332 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 324 - -
Csa03g01990 332 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 178 312 IPR008974 GO:0005515
Csa03g01990 332 Pfam Seven in absentia protein family 113 312 IPR018121 GO:0005737|GO:0006511|GO:0007275
Csa03g01990 332 MobiDBLite consensus disorder prediction 32 59 - -
Csa03g01990 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 123 IPR013083 -
Csa03g01990 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01990 Csa-Chr3:15666843 Csa06g00720 Csa-Chr6:5872376 2.14E-179 dispersed
Csa03g01989 Csa-Chr3:15655856 Csa03g01990 Csa-Chr3:15666843 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01990 K04506 - csv:105434867 719.153