Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g01990 | ATGGATTTGGATAGTATCGAGTGTGTATCGTCTTCTGATGGTCTCGATGAGGATGAGATTCATCTGCACCACACCCTTCATCCTTATTCCCAATCTCATCATCATCCCGAGTTGTCCGCATCTAAGCCTCGTTATGGAAACAATAATAGCGCTGTGAACGGTGGTCCCACTGCAACTGCGCCGGCAACTAACGTTCATGAATTGCTGGAATGCCCTGTGTGTACTAATTCTATGTACCCTCCCATCCATCAGTGCCACAACGGACATACCTTATGTTCCACATGTAAAACGAGAGTTCATAACCGGTGCCCAACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTGGCACTGGAGAAGGTGGCAGAGTCACTTGAATTGCCTTGCAAGTATTATTCATTGGGTTGCACTGAGATATTTCCATACTACAGTAAACTTAAGCATGAGGGTTTGTGCAACTACAGACCCTATAGTTGTCCATATGCTGGGTCAGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGACATGCACACTGGCTGCACATTTAACCATCGCTATGTTAAGTCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAGGCTTTTCAGCTCGGCATGGCTCCAGTCTACATGGCTTTCCTCCGTTTCATGGGCGATGAGAATGACGCCCGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTATTAGAGATAGTCATCGAAAAGTTAGGGACAGCCATGATGGATTAATTATCCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGAAAGGAACTGAAGCTGAGGGTTACAGGAAGGATATGGAAGGAACAAAACCCGGATGCTGGTGTTTGCATACCAAACCTTTGTAGCTAA | 999 | 45.75 | MDLDSIECVSSSDGLDEDEIHLHHTLHPYSQSHHHPELSASKPRYGNNNSAVNGGPTATAPATNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEGLCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS* | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 15666843 | 15670345 | + | CsaV3_3G019900.1 | Csa03g01990 | 522895 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g01990 | 332 | MobiDBLite | consensus disorder prediction | 28 | 59 | - | - | |
Csa03g01990 | 332 | CDD | Sina | 185 | 313 | - | - | |
Csa03g01990 | 332 | ProSiteProfiles | Zinc finger SIAH-type profile. | 124 | 184 | IPR013010 | GO:0008270 | |
Csa03g01990 | 332 | SUPERFAMILY | RING/U-box | 58 | 110 | - | - | |
Csa03g01990 | 332 | SUPERFAMILY | TRAF domain-like | 124 | 316 | - | - | |
Csa03g01990 | 332 | ProSiteProfiles | Zinc finger RING-type profile. | 71 | 107 | IPR001841 | - | |
Csa03g01990 | 332 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 177 | IPR013083 | - | |
Csa03g01990 | 332 | CDD | RING-HC_SIAHs | 69 | 107 | - | - | |
Csa03g01990 | 332 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 324 | - | - | |
Csa03g01990 | 332 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 178 | 312 | IPR008974 | GO:0005515 | |
Csa03g01990 | 332 | Pfam | Seven in absentia protein family | 113 | 312 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Csa03g01990 | 332 | MobiDBLite | consensus disorder prediction | 32 | 59 | - | - | |
Csa03g01990 | 332 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 123 | IPR013083 | - | |
Csa03g01990 | 332 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 1 | 324 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01990 | Csa-Chr3:15666843 | Csa06g00720 | Csa-Chr6:5872376 | 2.14E-179 | dispersed | |
Csa03g01989 | Csa-Chr3:15655856 | Csa03g01990 | Csa-Chr3:15666843 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g01990 | K04506 | - | csv:105434867 | 719.153 |