Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01994 ATGGGCTACGGCAGGCTCAACGAAACCGACCCCGGCGGCCCTTCCCACTCTTCCCCCGCCTCCCCTCCCTTCCAACTCTCCTCCCACCATCCCACTCCCAATCGGAGGACCACACGCCTTCTCCTTATTTCCTTCCTCTCTCTCCTTCTCATCGTCGCCGCCGCCGTCTCCGCTACCTTCCTCATCGGACTACGAACCGCCTCCCCTGCTCGATCCGACCCCAATCTCCCTCGTAAACCCACTCAGGCAATTTCCAAAGCTTGTAGCCGAACTCGCTTCCCCACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGGCTCTCTCAACGCCAACGAACAAGATCTCGTTCACATTTCCTTCAATGTCACTCTCCAACATCTCAACAAAGCCCTCTATTCATCCTCTGAGATTTCCTCTCTTCAAATGGATCTCCGCGTTCGTTCCGCTTACGATGCTTGTCTCGAACTCCTCGACGACTCCATCGACGCTGTTTCTCGCTCCTTGCAATCCGTCGCACCGTCTTCCTCCTCCTCCACTCCGCAGCGCCTCGGCTCATCTGAAGATATCATTACTTGGCTTAGCGCTGCCCTTACTAATCAAGACACATGTACGGATGGATTCTCTGAACTCTCCGGTACTGTGAAAAACCAAATGGCAGATAAACTTCACAATCTGTCTGAACTTGTTAGTAATTGCTTGGCGCTGTTTTCCGGTAGTGAAACGAGCGATTTCGCCGGAGTGCCGATTCAGAACAAACGACGGTTGATGGAGGAGGAGGGAGAGAATGAGGATAGTTCCGGTAAGTTCCCGAGATGGATGAACCGGAGAGAGAGAAGGTTACTGACGTTGCCGGTGGGAGTGTTACAGGCGGATATTGTGGTTTCTCAGAACGGTAACGGAACGGTGAAAACGATCGCGGAAGCGATCAAAAAGGCACCGCAGTACAGTAGTAGAAGGACGATCATTTACGTGATGGCAGGAAGGTACGAAGAGAAAAACTTGAAGGTTGGGAGGAAGAAAACTAACCTCATGTTTGTTGGAGATGGGAAGGGTAAAACTGTCATTTCGGGTTCTAAAAGTATCTTTGATAATGTGACAACTTTTCACACGGCATCGTTTGCGGCCACCGGCGCCGGAATAATCTTGAGGGACATGACATTTGAGAATTGGGCTGGACCGGGACGGCATCAAGCAGTTGCGCTTCGAGTCGGCGCCGACCATGCAGTGGTCTACCGCTGCAACATAATCGGGTATCAAGACACTCTCTACGTCCATTCGAACCGTCAGTTCTACAGAGAATGCGACATTTACGGGACAGTGGATTTCATCTTCGGCAACGCGGCTGTGGTGTTTCAGAACTGCAGCATTTACGCTCGTAAGGCAATGGCACTTCAAAAGAACACAATCACCGCCCAAAACAGGAAAGACCCGAATCAAAACACCGGGATTTCAATCCACGCCTGCCGGATCTTGGCCACCTCGGATCTAGAATCGTCCAACACCTCTAACCCGACGTATCTGGGGCGTCCGTGGAAATTATACTCAAGAACGGTGGTTATGTTATCGTACATAGGGAACCACGTGCACCCACGGGGTTGGTTGGAGTGGAACGCCACGTTTGCATTGGACACGCTGTATTACGGTGAGTATATGAATTATGGACCGGGTGGGGCGGTGGGGCAGAGGGTGACGTGGCCTGGGTATCGAGTGATAACGTCCACGGTGGAAGCGAGTAAGTTCACGGTGGCTCAGTTTATTTACGGTTCGTCGTGGTTGCCGTCGACGGGAGTTGCATTTCTGGGAGGGCTAAATGTGTAA 1818 52.09 MGYGRLNETDPGGPSHSSPASPPFQLSSHHPTPNRRTTRLLLISFLSLLLIVAAAVSATFLIGLRTASPARSDPNLPRKPTQAISKACSRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNVTLQHLNKALYSSSEISSLQMDLRVRSAYDACLELLDDSIDAVSRSLQSVAPSSSSSTPQRLGSSEDIITWLSAALTNQDTCTDGFSELSGTVKNQMADKLHNLSELVSNCLALFSGSETSDFAGVPIQNKRRLMEEEGENEDSSGKFPRWMNRRERRLLTLPVGVLQADIVVSQNGNGTVKTIAEAIKKAPQYSSRRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGSKSIFDNVTTFHTASFAATGAGIILRDMTFENWAGPGRHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMALQKNTITAQNRKDPNQNTGISIHACRILATSDLESSNTSNPTYLGRPWKLYSRTVVMLSYIGNHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV* 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15703537 15707297 - CsaV3_3G019940.1 Csa03g01994 522899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01994 605 SMART PMEI_2 79 235 IPR006501 GO:0004857
Csa03g01994 605 PANTHER PECTINESTERASE 30 603 - -
Csa03g01994 605 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 237 IPR035513 -
Csa03g01994 605 ProSitePatterns Pectinesterase signature 2. 436 445 IPR033131 -
Csa03g01994 605 CDD PMEI-like_3 87 237 - -
Csa03g01994 605 Pfam Plant invertase/pectin methylesterase inhibitor 83 235 IPR006501 GO:0004857
Csa03g01994 605 MobiDBLite consensus disorder prediction 11 32 - -
Csa03g01994 605 Pfam Pectinesterase 291 588 IPR000070 GO:0030599|GO:0042545
Csa03g01994 605 Gene3D - 286 603 IPR012334 -
Csa03g01994 605 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 236 IPR006501 GO:0004857
Csa03g01994 605 MobiDBLite consensus disorder prediction 1 32 - -
Csa03g01994 605 PANTHER PECTINESTERASE 30 603 - -
Csa03g01994 605 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 238 IPR035513 -
Csa03g01994 605 SUPERFAMILY Pectin lyase-like 288 601 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01994 Csa05g00051 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01994 Csa-Chr3:15703537 Csa07g01869 Csa-Chr7:18705097 9.54E-169 dispersed
Csa01g02746 Csa-Chr1:24347384 Csa03g01994 Csa-Chr3:15703537 3.11E-147 transposed
Csa03g00005 Csa-Chr3:181308 Csa03g01994 Csa-Chr3:15703537 4.61E-148 transposed
Csa03g01994 Csa-Chr3:15703537 Csa05g00051 Csa-Chr5:235332 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01994 - - csv:101214987 1151.73