Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01999 ATGGAGCAAGGATCTGGGTTTTCCACTTCTTCCAACCCTTCTCAGCTCTCGCGGGCATGTCTTACAAGGAATCTAATACTTGCATACCAAAGTTTTGGAGTAGTGTATGGAGATTTGAGCACTTCACCGCTCTACGTTTACTCAAGTACATTTGCTGGGAAGTTGCAAAAACATCGAACTGAGGAAGTAGTATTTGGTGCATTCTCCTTGATCTTCTGGACTTTTACATTGATACCATTGTTAAAGTATGTCTTCATTGTATTGAGCGCAGATGACAATGGCGAAGGTATGGGTTGGATTGCAGTACTTAGCTCGTTCACTTATGTGAGATTTAATCAATCCTCTAAGGTTCTTTTGTGCGCCATTTGTTCTCTGGCTGCAGGAGGAACATTTGCTCTTTACTCCCTGCTCTGCCGACATGCTAAGTTGAGTTTACTTCCTAACCAACAAGCAGCGGATGAGGAGCTCTCAGCATACAGATATGGTCCATCTTCTCACGCAGTAGCCCCTTCTCAACTAAAAAGGTTTTTGGAAAGGCATAAAACACTTAGGACAATCTTACTTCTTGTCGTATTATTTGGTGCTTGCATGGTCATTGGTGATGGAGTGCTAACTCCTGCAATTTCAGTTCTATCATCAGTTTCAGGTTTACAAGTTACTGAAGCAAAATTGACCAACGGGACACTCCTTCTGATTGCTTGTGCCATATTGGTTGGTCTGTTTGCTCTGCAGCATTGTGGCACCCATAAGGTTGCATTTATGTTTGCTCCAATAGTTATCATCTGGCTGTTGTCAATTTTCTCTATTGGCCTGTACAACATAATACATTGGAACCCAAGTATTATTCGTGCAATCTCTCCTCATTATGTTATCAAGTTCTTTAGAGTCACTGGTAAAGATGGGTGGCTTTCTCTCGGAGGGATTCTTCTGGCCATAACTGGTACTGAGGCGATGTTTGCGGATCTTGGTCATTTCACTGCTTTGTCGATCAGGATTGCATTTGCATTTCTTATCTACCCTTGTTTGGTTGTACAATACATGGGTCAAGCTGCCTTTCTGTCTAAGAACCTTAATTTGTTTCCAAACAGTTTTTATGACTCGATACCTGATCCTGTATTTTGGCCTGTTTTTGTTATTGCCACTCTTGCAGCTATTGTGGGGAGCCAGGCAGTCATTACTGCTACTTTCTCAATTGTTAAACAATGCCATGCCCTTGGTTGCTTTCCAAGAGTGAAAGTTGTCCACACCTCTAAACACATATATGGGCAGATCTACATCCCAGAAATAAACTGGATATTGATGGTCCTCACTCTTTCCATTACAATAGGATTTCGAGACACGACACTGATTGGAAATGCTTATGGACTCGCCTGCATGACAGTTATGTTTGTAACAACATTTCTTATGGCACTTGTCATAGTATTCGTTTGGCAAAAAAGTATCCTGCTGGCTGCACCTTTTCTTATCTTCTTCTGGTCTGTCGAGGGTGCCTACTTAACAGCAGCATTCATAAAAGTGCCTCAAGGAGGGTGGGTTCCGCTTGTGCTATCAGCCTTTTTTATGATTGTTATGTTTGTCTGGCATTATGGCACTCGCAAGAAGTACAACTTTGATCTACACAATAAGGTTTCACTGAAGTGGTTGCTTGGACTAGGCCCTAGCCTCGGTATAGTTCGTGTCCCTGGGATTGGTCTCATATACTCAGAATTGGCTACAGGAGTACCTGCAATATTTTCTCACTTTGTGACAAATCTCCCTGCATTTCACAAGGTTTTAGTCTTTGTTTGTGTAAAGTCTGTTCCCGTTCCATATGTCTCCCCCGAAGAGCGTTTTCTCATTGGGAGAGTTTGTCCTAGACCATATCGGATGTATCGGTGCATAGTGAGGTATGGCTACAAGGACATTCAGAAGGATGATGGGGACTTTGAGAACCAACTGATACTAAACATTGCAGAATTCATTCAAATGGAGGCAGAGGAACCACAATTCTCAAGCTCCGAAAGTTCTTCAGTCGATGGGAGGATGGCAGTAATAAGCACTCGGAATATACAATCAAGCATAATAGTGTCAGGGCATGAAGAAACGGGTACCAGCAACTCCATCTACAGCAGCAAATCTGCCACACTCCAAAGTTTACGATCTGTTTACGAGGACGAGAATCCACAACTAAGAAGGCGCCAAGTGAGGTTTCAGTTATCTCCCATCCCTTCAATGGACCCAAGAGTTAAGGAAGAGTTAATAGACTTGATCCAAGCCAAAGAAGCTGGTGTAGCATATATAATGGGACACTCATATGTGAAGGCAAGACGATCTTCGTCATATTTGAAAAAGCTTGTAATAGATATCGGATACTCATTCCTCCGTAAGAACTGCAGAGGCCCGTCTGTTGCACTCAATATCCCGCACATCAGTCTAATTGAAGTGGGCATGATATATTATGTTTAG 2445 42.54 MEQGSGFSTSSNPSQLSRACLTRNLILAYQSFGVVYGDLSTSPLYVYSSTFAGKLQKHRTEEVVFGAFSLIFWTFTLIPLLKYVFIVLSADDNGEGMGWIAVLSSFTYVRFNQSSKVLLCAICSLAAGGTFALYSLLCRHAKLSLLPNQQAADEELSAYRYGPSSHAVAPSQLKRFLERHKTLRTILLLVVLFGACMVIGDGVLTPAISVLSSVSGLQVTEAKLTNGTLLLIACAILVGLFALQHCGTHKVAFMFAPIVIIWLLSIFSIGLYNIIHWNPSIIRAISPHYVIKFFRVTGKDGWLSLGGILLAITGTEAMFADLGHFTALSIRIAFAFLIYPCLVVQYMGQAAFLSKNLNLFPNSFYDSIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMVLTLSITIGFRDTTLIGNAYGLACMTVMFVTTFLMALVIVFVWQKSILLAAPFLIFFWSVEGAYLTAAFIKVPQGGWVPLVLSAFFMIVMFVWHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDIQKDDGDFENQLILNIAEFIQMEAEEPQFSSSESSSVDGRMAVISTRNIQSSIIVSGHEETGTSNSIYSSKSATLQSLRSVYEDENPQLRRRQVRFQLSPIPSMDPRVKEELIDLIQAKEAGVAYIMGHSYVKARRSSSYLKKLVIDIGYSFLRKNCRGPSVALNIPHISLIEVGMIYYV* 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15871980 15879384 + CsaV3_3G019990.1 Csa03g01999 522904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01999 814 Pfam K+ potassium transporter 29 634 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa03g01999 814 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 21 103 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa03g01999 814 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 124 814 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa03g01999 814 PANTHER POTASSIUM TRANSPORTER 4 21 103 - -
Csa03g01999 814 PANTHER POTASSIUM TRANSPORTER 4 124 814 - -
Csa03g01999 814 TIGRFAM kup: potassium uptake protein 127 814 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01022 Csa-Chr1:6345216 Csa03g01999 Csa-Chr3:15871980 0 dispersed
Csa01g02530 Csa-Chr1:22301381 Csa03g01999 Csa-Chr3:15871980 0 dispersed
Csa03g01999 Csa-Chr3:15871980 Csa05g02908 Csa-Chr5:29584874 0 dispersed
Csa03g01999 Csa-Chr3:15871980 Csa03g03914 Csa-Chr3:34316948 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01999 K03549 - csv:101208973 1525.76