Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02016 ATGTATGGGGTACTGCCGTTCTCTTATCAGGCGCCGCCGCCGGAGCCGATTCCATTTCGGCCAGTCTATGTCGATGTCTTAAACTACGTACCAGTCCGCCGTTTTCACCATTGCTTGGATTCTTCTATGCGAAGGTCATGTACAGCACTAAGACCTTCTCTTAGCGTATTTCCTCACTTTCTTAAACCCACAAAACTCTTTCAAGGTTATTCCTCTCCTTGTAATGGAACTAGAATCAAACCTGCTCTCGTTCATTCTCCTTTGCTGGCTGGTGACGGCCATGGGTGTGATGGAAATAACAATGGTGGCTGGAATAATTCGAATCCTTTTGGGGGTTTTGGATGGTGGCAGTATGACGGTGATTCTCCCCCATGGTCGGACAATGCCTTCCTTGCTTTCTTTTTTTCCTCTGTTCTGGGTTGTTTCTGCCTCTTTCAATTGGCAGTAGCGCTAGCACGTAACAATATGAACACCGAGTCTATTTGGGAAGTAAAAGGAGGTAAGCGAATCCGCCTCATTCTCGATACGTATAGAGATGAGTTCCATGTTGCAACTGGCATGCCGTCGTCTTCGTTATCCTTTTCCTTTGTCAACGTTTGGCTTCGTTGCAGCGATATATTCACGCGTTTGATGCTTCCGGAGGGTTTTCCAGACAGTGTCACCAGCGACTATCTGGAATATTCCCTTTGGCGAGGAGTCCAGGGGATTGCCAGCCAAGTTAGTGGGGTGCTTGCAACTCAGGCACTGCTTTATGCTGTTGGATTGGGGAAAGGAGCTATTCCGACTGCTGCTGCAGTGAATTGGGTACTGAAAGATGGATTTGGATATCTAAGTAAAATTTTTCTCTCAAAATATGGACGGCACTTTGATGTTCATCCGAAGGGGTGGAGGTTGTTCGCTGATCTTCTGGAAAACGCTGCCTATGGGATGGAAATGTTAACTCCCGCATTTCCCCTCCATTTTGTCGTGATCGGTGCTGCTGCTGGGGCCGGACGATCTGCAGCTGCCTTGATTCAGGCTGCTACTAGGAGTTGTTTTTATGCTGGCTTTGCTGCTCAAAGGAATTTTGCCGAGGTGATTGCTAAAGGTGAAGCACAAGGAATGGTGAGCAAGTCTATCGGTATGATGCTTGGCATTACATTGGCCAATCGTATAAGGTCCTCAACATCACTTGCTCTTGGGTGCTTTAGCATAGTGACCTTAATCCACATGTTCTGCAATCTAAAATCATACAAATCCATTCAACTAAGGACATTAAATCCTTATCGTGCAAGTTTGGTCTTCAGTGAATATCTGTTGAGTGGTGAGGTGCCTTCGATTAAGGATGTGAACAATGAAGAACCTCTTTTTCCGGCTGTACCACTTCTTAATAGAAAGCTTGCATGTGATGAGCCAAAGTTGAGCTTACTATCTGCCGAAGCGAAGGAATCAGCAGCAAATATTGAAAAGCGACTGCAATTGGGTTCAAAGCTCAGTGATGTGGCCACTTGTGAGGAGGATGTTCTTGAACTCTTAAGTCTGTTCAATAAAGAAAATTATATTCTATCAGAGCACAGGGGAAAATATTGTGTAATGCTTAAAGAAAGTGCTTCGCCTGTAGACATGCTGAAGGCAGTATTTCATGTCAATTATTTGCATTGGTTAGAGAGAAACGCTGGAATAACAGCAAGAAGTGCTTCTAATGACTGCAGACCAGGAGGAAGGCTACAAATGTCTTTGGAGTATGTGGAGAGGGAATTCAAGCATGTCAAATATGATGGGGAATTGGCTGGTTGGTCGACTGATGGCCTAATTGCAAGGCCCTTAACTACTAGGATTTGTGAATGTCATGTAACTTAG 1839 45.02 MYGVLPFSYQAPPPEPIPFRPVYVDVLNYVPVRRFHHCLDSSMRRSCTALRPSLSVFPHFLKPTKLFQGYSSPCNGTRIKPALVHSPLLAGDGHGCDGNNNGGWNNSNPFGGFGWWQYDGDSPPWSDNAFLAFFFSSVLGCFCLFQLAVALARNNMNTESIWEVKGGKRIRLILDTYRDEFHVATGMPSSSLSFSFVNVWLRCSDIFTRLMLPEGFPDSVTSDYLEYSLWRGVQGIASQVSGVLATQALLYAVGLGKGAIPTAAAVNWVLKDGFGYLSKIFLSKYGRHFDVHPKGWRLFADLLENAAYGMEMLTPAFPLHFVVIGAAAGAGRSAAALIQAATRSCFYAGFAAQRNFAEVIAKGEAQGMVSKSIGMMLGITLANRIRSSTSLALGCFSIVTLIHMFCNLKSYKSIQLRTLNPYRASLVFSEYLLSGEVPSIKDVNNEEPLFPAVPLLNRKLACDEPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGKYCVMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHVKYDGELAGWSTDGLIARPLTTRICECHVT* 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16102248 16146575 - CsaV3_3G020160.1 Csa03g02016 522921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02016 612 PANTHER RUS1 FAMILY PROTEIN C16ORF58 157 607 - -
Csa03g02016 612 Pfam Vitamin B6 photo-protection and homoeostasis 203 433 IPR006968 -
Csa03g02016 612 PANTHER RUS1 FAMILY PROTEIN C16ORF58 157 607 IPR006968 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g02016 Csa05g03046 CCT
Csa03g02016 Csa05g03046 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00671 Csa-Chr3:5909589 Csa03g02016 Csa-Chr3:16102248 4.49E-44 dispersed
Csa03g02016 Csa-Chr3:16102248 Csa06g02081 Csa-Chr6:18588434 1.58E-48 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02016 - - csv:101209948 1188.33