Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02049 ATGGTTCAGCAGACTAATGCATCCAAATTGAGATGGGGGGAGCTTGAAGATGACGATGGGGATCTAGATTTTCTTCTTCCTCCAAAGCAAATTATCGGGCCAGACGAAAATGGGTTGAAGAAAATTGTTGAGTATCAGTTTAACGAAGATGGTAACAAGGTCAAAATCACAACGACAACTCGTACACGCAAGCTCGCCCATGCTCGCCTTAGTAAACATGCGGTAGAGCGCCGTTCTTGGGCAAAGTTCGGCGATGCTGTCCATGAAGACGTCGGCAGTCGGCTCACTATGGTCTCCACTGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCCAAGGTTGCTGGTGACCCGCTAGCTCAACTTGGAAAAGGGGGAGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGACCTGGCACCACAAGCTGATGGATTGGATAAGCCTGTTGCACCAGAGACTACAGCTGCTGCTCCTGGTGCAACAAAGGGAGCGTATGTTCCTCCAGGTATGAGAGCAGGGGCGGAGAGGACTGGAACTGACATGAGGCGTAGGAATGATGAAAACTCTGTACGTGTTACCAATCTTTCGGAGGACACTAGGGAACCTGACTTGCTTGAGCTCTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATCAAAAGAATGGCATGAGCAGAGGATTTGGTTTTGTAAACTTTGTGAATCGTGAGGATGCACAAAGATCAATTAACAAGCTTAATGGATATGGTTACGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCTAGGGCGACTTAA 867 48.67 MVQQTNASKLRWGELEDDDGDLDFLLPPKQIIGPDENGLKKIVEYQFNEDGNKVKITTTTRTRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQADGLDKPVAPETTAAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKNGMSRGFGFVNFVNREDAQRSINKLNGYGYDNLILRVEWATPRAT* 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16611926 16615293 - CsaV3_3G020490.1 Csa03g02049 522954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02049 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676
Csa03g02049 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Csa03g02049 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Csa03g02049 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Csa03g02049 288 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Csa03g02049 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743|GO:0005737|GO:0005852
Csa03g02049 288 CDD eIF3G 37 156 IPR024675 -
Csa03g02049 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 275 IPR000504 GO:0003723
Csa03g02049 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Csa03g02049 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Csa03g02049 288 SMART rrm1_1 208 281 IPR000504 GO:0003723
Csa03g02049 288 Gene3D - 179 288 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00509 Csa-Chr1:3395426 Csa03g02049 Csa-Chr3:16611926 0 dispersed
Csa03g02049 Csa-Chr3:16611926 Csa03g01837 Csa-Chr3:14099253 8.50E-06 dispersed
Csa03g02049 Csa-Chr3:16611926 Csa07g02337 Csa-Chr7:21640453 2.22E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02049 K03248 - csv:101207022 552.747