Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g02049 | ATGGTTCAGCAGACTAATGCATCCAAATTGAGATGGGGGGAGCTTGAAGATGACGATGGGGATCTAGATTTTCTTCTTCCTCCAAAGCAAATTATCGGGCCAGACGAAAATGGGTTGAAGAAAATTGTTGAGTATCAGTTTAACGAAGATGGTAACAAGGTCAAAATCACAACGACAACTCGTACACGCAAGCTCGCCCATGCTCGCCTTAGTAAACATGCGGTAGAGCGCCGTTCTTGGGCAAAGTTCGGCGATGCTGTCCATGAAGACGTCGGCAGTCGGCTCACTATGGTCTCCACTGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCCAAGGTTGCTGGTGACCCGCTAGCTCAACTTGGAAAAGGGGGAGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGACCTGGCACCACAAGCTGATGGATTGGATAAGCCTGTTGCACCAGAGACTACAGCTGCTGCTCCTGGTGCAACAAAGGGAGCGTATGTTCCTCCAGGTATGAGAGCAGGGGCGGAGAGGACTGGAACTGACATGAGGCGTAGGAATGATGAAAACTCTGTACGTGTTACCAATCTTTCGGAGGACACTAGGGAACCTGACTTGCTTGAGCTCTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATCAAAAGAATGGCATGAGCAGAGGATTTGGTTTTGTAAACTTTGTGAATCGTGAGGATGCACAAAGATCAATTAACAAGCTTAATGGATATGGTTACGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCTAGGGCGACTTAA | 867 | 48.67 | MVQQTNASKLRWGELEDDDGDLDFLLPPKQIIGPDENGLKKIVEYQFNEDGNKVKITTTTRTRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQADGLDKPVAPETTAAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKNGMSRGFGFVNFVNREDAQRSINKLNGYGYDNLILRVEWATPRAT* | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 16611926 | 16615293 | - | CsaV3_3G020490.1 | Csa03g02049 | 522954 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g02049 | 288 | SUPERFAMILY | RNA-binding domain, RBD | 205 | 286 | IPR035979 | GO:0003676 | |
Csa03g02049 | 288 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 7 | 287 | - | - | |
Csa03g02049 | 288 | CDD | RRM_eIF3G_like | 208 | 283 | IPR034240 | - | |
Csa03g02049 | 288 | PIRSF | Transl_init_eIF-3_RNA-bind | 1 | 288 | IPR017334 | GO:0003743|GO:0005737|GO:0005852 | |
Csa03g02049 | 288 | Pfam | Eukaryotic translation initiation factor 3 subunit G | 31 | 157 | IPR024675 | - | |
Csa03g02049 | 288 | Hamap | Eukaryotic translation initiation factor 3 subunit G [EIF3G]. | 9 | 287 | IPR017334 | GO:0003743|GO:0005737|GO:0005852 | |
Csa03g02049 | 288 | CDD | eIF3G | 37 | 156 | IPR024675 | - | |
Csa03g02049 | 288 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 209 | 275 | IPR000504 | GO:0003723 | |
Csa03g02049 | 288 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 207 | 285 | IPR000504 | GO:0003723 | |
Csa03g02049 | 288 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 7 | 287 | - | - | |
Csa03g02049 | 288 | SMART | rrm1_1 | 208 | 281 | IPR000504 | GO:0003723 | |
Csa03g02049 | 288 | Gene3D | - | 179 | 288 | IPR012677 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00509 | Csa-Chr1:3395426 | Csa03g02049 | Csa-Chr3:16611926 | 0 | dispersed | |
Csa03g02049 | Csa-Chr3:16611926 | Csa03g01837 | Csa-Chr3:14099253 | 8.50E-06 | dispersed | |
Csa03g02049 | Csa-Chr3:16611926 | Csa07g02337 | Csa-Chr7:21640453 | 2.22E-11 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g02049 | K03248 | - | csv:101207022 | 552.747 |