Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02052 ATGCCGGAAGACACCCTTCCCATAGACTATGTAATGGAAGCCGCCTCCGGACCTCACTTCTCTGGCCTCCGACTCGATGGACGTCTCGCCTCTCCGCCGTCTTCCTCAACTTCCTCTCCGGCTCACCGCTCTTCTTTTTTATCTTCCTTTGCACAGGCCGATACCAACTCTCCCAGGCAGCCCTTTGTCATCGGTGTTTCTGGAGGTACCGCTTCTGGGAAGACGACGGTGTGTGACATGATTATCCAGCAACTTCATGATCACAGGGTTGTGCTGGTCAATCAGGACTCGTTTTACCGCGGGTTGACAGCTGAGGAACTAGAACGCGTACACGAGTATAACTTTGATCATCCTGATTCTTTTGACACCGAGCAGCTTGTAGATTGTATCGAGAAGCTAAAGAGTGGCCAACCTTACCATGTCCCAATTTATGATTTTAAAACTCACCAACGCTGTGTAGATAGTTTTCGACAGGTCAATGCATCTAATGTTATCATCTTGGAAGGTATTTTGGTTTTCCATGACCAAAGAGTCCGCAATCTGATGAATATGAAGATATTTGTTGACACAGATCCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACGGTAGAAAGGGGCAGGGACATTAACTCTGTTCTTGAACAGTATGCCAAGTTTGTAAAACCTGCTTTTGATGATTTCATTCTGCCATCAAAGAAGTATGCTGATGTGATCATACCACGTGGGGGTGATAACCATGTTGCAATTGATTTGATTGTGCAACACATCCATACTAAGTTAGGCCAGCATGACCTATGCAAAATATACCCCAATGTTACTGTCATTCAGTCAACATTTCAGATAAGAGGCATGCATACATTAATTCGAGATCGGGACATTTCAAAACATGATTTTGTATTCTATTCAGATCGACTCATTCGTCTGGTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAAAAACAAGTGATCACTCCTACGGCATCTGTATACACTGGGGTTGATTTCTGCAAGAAACTATGTGGAGTATCCATTGTTCGGAGTGGTGAAAGCATGGAAAATGCATTGCGTGCATGTTGCAAAGGGATAAAAATTGGGAAGATTCTGATTCACCGTGAGGGAGATAATGGGAAGCAGCTGATATATGAGAAATTACCTAGTGATATATCAGAGCGACATGTCCTGCTCCTAGATCCCGTTCTTGCTACTGGCAACTCAGCTAATCAAGCAATTGATCTACTCATACAAAAGGGAGTTCCAGAAGCGCACATCATATTCCTGAACTTGATCTCTGCCCCTGAGGGAATTCACTGTGTTTCCAAACGCTTCCCATCCTTGAAAATTGTCACTTCTGAGATCGATGTTGGATTGGACGAAAATTATCGTGTCATACCCGGCCTAGGTGAATTTGGTGATCGTTACTTCGGTACCGATGATTAG 1449 44.38 MPEDTLPIDYVMEAASGPHFSGLRLDGRLASPPSSSTSSPAHRSSFLSSFAQADTNSPRQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCIEKLKSGQPYHVPIYDFKTHQRCVDSFRQVNASNVIILEGILVFHDQRVRNLMNMKIFVDTDPDVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPSDISERHVLLLDPVLATGNSANQAIDLLIQKGVPEAHIIFLNLISAPEGIHCVSKRFPSLKIVTSEIDVGLDENYRVIPGLGEFGDRYFGTDD* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16653315 16663981 + CsaV3_3G020520.1 Csa03g02052 522957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02052 482 CDD UMPK 63 261 IPR000764 -
Csa03g02052 482 SUPERFAMILY PRTase-like 264 481 IPR029057 -
Csa03g02052 482 MobiDBLite consensus disorder prediction 23 43 - -
Csa03g02052 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
Csa03g02052 482 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524|GO:0016301
Csa03g02052 482 PRINTS Uridine kinase signature 61 78 - -
Csa03g02052 482 PRINTS Uridine kinase signature 91 102 - -
Csa03g02052 482 PRINTS Uridine kinase signature 136 151 - -
Csa03g02052 482 PRINTS Uridine kinase signature 193 203 - -
Csa03g02052 482 PRINTS Uridine kinase signature 207 218 - -
Csa03g02052 482 PRINTS Uridine kinase signature 229 242 - -
Csa03g02052 482 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 16 479 IPR029930 GO:0004849|GO:0044206
Csa03g02052 482 TIGRFAM udk: uridine kinase 62 261 IPR000764 -
Csa03g02052 482 Gene3D - 57 264 IPR027417 -
Csa03g02052 482 PANTHER URIDINE KINASE 16 479 - -
Csa03g02052 482 CDD PRTases_typeI 338 453 IPR000836 -
Csa03g02052 482 ProSiteProfiles UvrC family, homology region profile. 167 250 IPR001162 GO:0009381
Csa03g02052 482 Pfam Uracil phosphoribosyltransferase 279 480 - -
Csa03g02052 482 Gene3D - 265 480 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02052 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101207261 952.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02052 Csa-Chr3:16653315 Csa07g01059 Csa-Chr7:10086934 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02398 . 33 189 PRT Gene Family AT1G80050 78.3 4.0e-66 247.7
Csa03g00299 . 77 227 PRT Gene Family AT1G80050 75.5 9.3e-63 236.5
Csa05g00402 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Csa02g01900 . 107 256 PRT Gene Family AT1G80050 70.7 8.4e-56 213.4
Csa02g02398 . 1 148 PRT Gene Family AT5G11160 79.7 7.4e-63 236.9
Csa05g00402 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Csa02g01900 . 83 222 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Csa03g00299 . 55 192 PRT Gene Family AT5G11160 72.5 1.4e-53 206.1
Csa02g01900 . 78 258 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Csa03g00299 . 51 227 PRT Gene Family AT1G27450 75.1 1.3e-73 272.7
Csa05g00402 . 7 180 PRT Gene Family AT1G27450 73.6 1.6e-71 265.8
Csa02g02398 . 11 183 PRT Gene Family AT1G27450 68.8 3.5e-66 248.1
Csa02g01318 . 74 558 PRT Gene Family AT2G16570 85.0 1.0e-241 832.8
Csa02g01318 . 73 558 PRT Gene Family AT4G34740 85.4 1.6e-242 835.5
Csa02g01318 . 30 531 PRT Gene Family AT4G38880 70.7 3.5e-199 691.4
Csa02g01900 . 78 258 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Csa03g00299 . 51 227 PRT Gene Family AT1G27450 75.1 1.3e-73 272.7
Csa05g00402 . 7 180 PRT Gene Family AT1G27450 73.6 1.6e-71 265.8
Csa02g02398 . 11 183 PRT Gene Family AT1G27450 68.8 3.5e-66 248.1
Csa02g02398 . 33 189 PRT Gene Family AT1G80050 78.3 4.0e-66 247.7
Csa03g00299 . 77 227 PRT Gene Family AT1G80050 75.5 9.3e-63 236.5
Csa05g00402 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Csa02g01900 . 107 256 PRT Gene Family AT1G80050 70.7 8.4e-56 213.4
Csa03g00299 . 51 144 PRT Gene Family AT4G22570 87.2 3.7e-44 174.1
Csa05g00402 . 6 104 PRT Gene Family AT4G22570 80.8 1.4e-43 172.2
Csa02g01900 . 82 174 PRT Gene Family AT4G22570 80.6 1.6e-39 158.7
Csa02g02398 . 11 100 PRT Gene Family AT4G22570 77.8 4.4e-37 150.6
Csa03g00299 . 52 143 PRT Gene Family AT4G12440 87.0 4.6e-41 163.7
Csa05g00402 . 1 96 PRT Gene Family AT4G12440 82.3 2.3e-40 161.4
Csa02g01900 . 78 173 PRT Gene Family AT4G12440 79.2 4.8e-38 153.7
Csa02g02398 . 1 148 PRT Gene Family AT5G11160 79.7 7.4e-63 236.9
Csa05g00402 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Csa02g01900 . 83 222 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Csa03g00299 . 55 192 PRT Gene Family AT5G11160 72.5 1.4e-53 206.1
Csa06g00490 . 1 186 PRT Gene Family AT1G71750 64.5 1.1e-68 256.5
Csa07g01059 . 16 468 PRT Gene Family AT1G55810 85.4 3.1e-225 777.7
Csa03g02052 . 19 482 PRT Gene Family AT1G55810 73.1 4.3e-198 687.6
Csa07g01059 . 65 467 PRT Gene Family AT3G27440 77.2 1.5e-184 642.5
Csa03g02052 . 80 482 PRT Gene Family AT3G27440 75.2 1.2e-178 622.9
Csa03g02052 . 1 483 PRT Gene Family AT3G27190 86.0 7.7e-246 846.3
Csa07g01059 . 3 467 PRT Gene Family AT3G27190 74.2 8.3e-208 719.9
Csa04g01535 . 3 289 PRT Gene Family AT3G53900 66.6 3.0e-107 385.2
Csa07g01059 . 1 468 PRT Gene Family AT4G26510 84.5 3.6e-232 800.8
Csa03g02052 . 11 482 PRT Gene Family AT4G26510 75.4 4.3e-209 724.2
Csa03g02052 . 1 482 PRT Gene Family AT5G40870 85.9 5.0e-245 843.6
Csa07g01059 . 3 470 PRT Gene Family AT5G40870 73.4 2.4e-207 718.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61