Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02065 ATGGCTCCACCTTCCAGATTATATATATACTACTTTCCTTCTTTTTCTCCATTAAATATCCTCTATACCTCTCTACTTTCTCTTTTATATCTTCCAAACCCTTTTCCCCCAATTTTCATTCTCTCTCTCCACACTTGCTTCTTCCCATTTTATGCTTCCCTTCTCCCATTGCTGTTCTTCTTCAAAATGCGGATGAGTTGTAATGGTTGCAGAGTCCTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGTCCTTGCTTGCAGTGGATCAAGTCCCCTGAATCTCAGGCTAATGCTACCGTTTTTCTTGCCAAGTTTTACGGCCGTGCTGGACTTATGAATCTCATCAACGCCGGTCCTGATCATCTCCGTCCTGCCATTTTTAGATCTCTTCTCTACGAGGCTTGTGGAAGGATTGTGAATCCCATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTTTGTCAAGCGGCTGTTGAGGCCGTACTTAAAGGTGCTCCGATCACGCCGATCAACTCCGAGGCAGCGACTACTGGCGATGGACCGCCCTTGAAAGCCTACGACATTCGTCACGTTTCCAAGGATGAAAACTCTGTCGCCTCCAACGACGGTGGAGCCAATCGGCCAGTCAAGACGCGTTGCAGGTTCAAGCGGTCGTCTGTGAAGGCGAAAGCGAGTAAAGGAATCGCCTCCACCGTTGTTGATGAGTCGACTCGACCAGTCTGCTCTACCGAGTTGAACAGGTCGTCGAGTGGTGAGTCGTCGTTGAGTCACCAATCAGATTCGCGACATCTGGAGAACGAGAGTAAAGAAACCGAGAGCATGATTTCAGTGGAGACGGCAGAGGTTTCTCCTCGTCCGGCGCAGTCGGTTTTGTTCCGATCGGAATCAACGGGGGGGCGCGAGGGCGTTTCAGTGCCAATTCCGCCAAGTGAATTAGCTCTGGAATTAACCCTGGGGATGGAGCCGGTGTTACGTGCCCAGCACGTGATTCCAATGAAAAAACGAAAGATAGAAGCCGAAGTTGGGTTGAGGCCCAAAAGCGAGACGTGCAATACCGTTTTAGGCCTTGATTTTGCAGCCTGA 1095 49.5 MAPPSRLYIYYFPSFSPLNILYTSLLSLLYLPNPFPPIFILSLHTCFFPFYASLLPLLFFFKMRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAATTGDGPPLKAYDIRHVSKDENSVASNDGGANRPVKTRCRFKRSSVKAKASKGIASTVVDESTRPVCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPRPAQSVLFRSESTGGREGVSVPIPPSELALELTLGMEPVLRAQHVIPMKKRKIEAEVGLRPKSETCNTVLGLDFAA* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16836290 16838373 - CsaV3_3G020650.1 Csa03g02065 522970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02065 364 MobiDBLite consensus disorder prediction 198 286 - -
Csa03g02065 364 Pfam Lateral organ boundaries (LOB) domain 66 165 IPR004883 -
Csa03g02065 364 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 63 360 - -
Csa03g02065 364 MobiDBLite consensus disorder prediction 262 278 - -
Csa03g02065 364 ProSiteProfiles LOB domain profile. 65 171 IPR004883 -
Csa03g02065 364 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 63 360 - -
Csa03g02065 364 MobiDBLite consensus disorder prediction 234 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02065 Csa-Chr3:16836290 Csa05g02614 Csa-Chr5:27325928 1.38E-65 dispersed
Csa03g02065 Csa-Chr3:16836290 Csa01g00381 Csa-Chr1:2368012 1.99E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31250 PF03195 LOB 2.60E-24 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02065 - - csv:101208245 708.368