Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02085 ATGAAGCGAGACCACACCCAACAATCCTCAAATCCAGCCACCGCCGGCAAGCCCAAGACATGGGCAGTCGAAGAGGAGGAAGACCACGACAAGCATCTAGCTGCTCTTGGCTACAATGTCCGGTTGTCGGACATGGCGGACGTTGCTTTGAAACTGGAACAGTTAGATATGGTAATGGGTTTATCGGAAGAAGATGGAATTTCTCACCTCTCTTCAAACACAGTCCATTACAATCCTTCCGATGTTTCTTCTTGGGTTCAAAGCATGCTCGCTGAACTCAATACTCCGCTTCAATCCCAAGGAATAATTCACGACCCTGTTCTCGCCATAGCTGAATCCACTTCCTTCTCCGTCGCTGCCGACTTCACCGATGATTCCGAGTACGATCTCAGAGCCATTCCCGGCGTTGCTGCTTTCCCACAAATTGATTCCTCCAACCCCAGAAAGCGATTCAAGAAATCTGATTCTGAATCGCTTCCTGTTACTGCATCTTGTTCTACTTCTTCGTCGTCCTCGTCAGAGCCGTCGCGCTCGGTGGTTCTGGTGGATTCTGCCGAGACTGGTGTCCGTCTAGTCCACAGCCTTCTTGCCTGCGCTGACGCAGTCGACACAAACAATCTCAATCTCGCCGAGGCTCTACTCAAACACATCAGATTCCTCGTTGAGGCTCAGGCCGGTGCTATGAGGAAAGTCGCCGGATATTTCGCTCAAGCTCTCACTTGCCGGATTTACAGATTCTACCCACAGGAGCCCTTCGATTATTTATCTTCATACACCGATCTTCTTCAAATGCATTTCTATGAATCTAGCCCCTATCTAAAATTCGCCCATTTCACTGCCAATCAAGCCATTCTCGAATCCGTTGGATCTGCTGGTTCCATCCACGTCGTCGATTTCAACCTCCAGCAAGGTCACCAATGGCCGCCGTTGATTCAGGCTTTCGCACTCCGACCAGGTGGGCCTCCGGCGTTTCATCTTACTGGAATCCGCCCCACGCCGGAGGAAAATTCCACTGACGGATTACAGGAGGTGGGTGCGAAATTGGCGCAATTCGCGGAAAAATTCGGCATGAAATTCGAATTCCGTGGGTTCTTCTGCAACAATTTGGCCGATCTCGAACCGTCGATACTCAATTTAGAAACAGAAACCGTCGCTATAAATTCCATTTTCGAGCTCCACCGTCTACTTGCCCATCCAGGCGCGATCGAAAAAGTTCTAACCACAATCAAAGAACTGAACCCCAGAGTCATTACCGTCGTGGAGCAGGTCGCGGACCATAACGGGCCGTCGTTCGTGGACCGATTCACTGAAGCACTACACTATTATTCAAGCTTATTCGATTCGTTAGAAGGGTCGCCAGCAGGGGGGGAGGATGTGGTGAGGTCAGAGGAGTATTTAGGGCGGCAAATATACAACGTAGTGGCGTGTGAAGGTTCTGACCGTGTGGAGCGGCATGAGACAGTGGCGCAGTGGCGGAGCCGGTTGAGCTCGAGTGGGTTTGATATGGTTCATTTGGGTTCTAACGTATTCAATCTGGCGAGTACTTTGCTGGCGGCTTTGTTCGGCGGTGGAAATGGGTACAGAGTTGAAGAGAATAACGGGAGTTTGACGCTGGGATGGCACACTCGGCCGCTCATAGCCACCTCGGCCTGGACGGTGGCCGGAGGCGGTGAGTCGACTCGACCGAGTTAA 1692 51.42 MKRDHTQQSSNPATAGKPKTWAVEEEEDHDKHLAALGYNVRLSDMADVALKLEQLDMVMGLSEEDGISHLSSNTVHYNPSDVSSWVQSMLAELNTPLQSQGIIHDPVLAIAESTSFSVAADFTDDSEYDLRAIPGVAAFPQIDSSNPRKRFKKSDSESLPVTASCSTSSSSSSEPSRSVVLVDSAETGVRLVHSLLACADAVDTNNLNLAEALLKHIRFLVEAQAGAMRKVAGYFAQALTCRIYRFYPQEPFDYLSSYTDLLQMHFYESSPYLKFAHFTANQAILESVGSAGSIHVVDFNLQQGHQWPPLIQAFALRPGGPPAFHLTGIRPTPEENSTDGLQEVGAKLAQFAEKFGMKFEFRGFFCNNLADLEPSILNLETETVAINSIFELHRLLAHPGAIEKVLTTIKELNPRVITVVEQVADHNGPSFVDRFTEALHYYSSLFDSLEGSPAGGEDVVRSEEYLGRQIYNVVACEGSDRVERHETVAQWRSRLSSSGFDMVHLGSNVFNLASTLLAALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWTVAGGGESTRPS* 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17145897 17148858 + CsaV3_3G020850.1 Csa03g02085 522990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02085 563 MobiDBLite consensus disorder prediction 144 177 - -
Csa03g02085 563 MobiDBLite consensus disorder prediction 157 177 - -
Csa03g02085 563 SMART DELLA_2 30 103 - -
Csa03g02085 563 MobiDBLite consensus disorder prediction 1 26 - -
Csa03g02085 563 Pfam GRAS domain family 191 552 IPR005202 -
Csa03g02085 563 ProSiteProfiles GRAS family profile. 182 552 IPR005202 -
Csa03g02085 563 Gene3D - 28 93 IPR038088 -
Csa03g02085 563 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 25 552 IPR005202 -
Csa03g02085 563 PANTHER DELLA PROTEIN RGL1 25 552 IPR030006 GO:0003712|GO:0005634
Csa03g02085 563 Pfam Transcriptional regulator DELLA protein N terminal 30 96 IPR021914 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02085 Csa-Chr3:17145897 Csa05g01594 Csa-Chr5:18792392 0 dispersed
Csa03g02085 Csa-Chr3:17145897 Csa06g00941 Csa-Chr6:7561913 1.85E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31252 PF03514 GRAS 2.50E-117 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02085 K14494 - csv:101203095 1107.05