Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02101 ATGGAGTTTCCGCAACGGTTTTTAGCGGCGGTGCTTCTGGGTTTTTCCTTTCTCGCTTTTGTCCGGACGGATCTGGCCTCTGATAGGGCGGCGCTCGTCGCTTTTCGGGCGGCCATGGGCGGCCGCCCCCGATTAGAGTGGAATCTCTCCGATGTATCTCCCTGTTCTTGGGCTGGTGTTAACTGTGACAGGAATGGGGTTTTTGAGCTTCGGCTTCCCGCCATGGGGCTTTCCGGTGAGCTTCCGATGGGCCTTGGGAATTTGACGCAGTTACAAACTCTTTCTCTAAGGTTTAATGCTCTGTCTGGACGGATTCCGGCGGATTTTGCGAATCTTCGTGGGTTGAGGAATCTTTACTTGCAGGGGAACTTGTTTTCTGGCGAGATTCCGCCGTTTCTGTTCGATTTGCGGAATTTGGTTCGGTTGAACATGGCGGACAACAACTTTACAGGTGAAATTTCATATGGGTTCAACAATTTGTCCCGTTTGGCTACTCTGTATTTACAGAACAATCAGTTTACTGGAGTTGTTCCTGAGTTAAATCTCACTCTTGAGCAATTTAATGTGTCGTTTAACCAATTGAATGGTTCGATTCCAACGAAGCTCTCTAGTTTTCCGGCGAGTTCTTTCGAGGGGAATTTGCTCTGTGGGGCGCCATTGTTACTCTGTAACTCAACAACGACCGAGCCCAGTCCAAAGTCGAAGCTCTCTGGTGGGGTGATTGCTGGAATTGTGATTGGTGGCTTGTTTGTTTTGGCGTTGATTTTGGTCGTTTTGATTCTTGTGTGTCAAAGAAAGAGTAAGGAGAAATCGGAGTCGAAAGAGGTGGTTCGGACGGGAGGTGAGGTTGAGGTGCCGGGAGAGAAGACTACGACAGTGGAAGGGAGTAGCGAAAGAATAAACATAGATCATTTGATTGCACCAAAATCCTCGACAAAGGGCGGCGAAAGAGATAAGAAATTGGTTTTCTTTGGGAATGTGGGAAATGTGTTTGATTTGGAGGACTTGTTGAGGGCATCGGCGGAAGTCCTTGGGAAGGGGACGTTTGGGACCGCTTATAAGGCGACACTGGAGACGGGGATGGTGGTGGCCGTGAAGCGGTTGAAGGAGATGACGGCAGCGGAGAAGGAATTCAGGGAGAAGATGGAAGAGGCAGGGAGGATGAAGCATGAGAATTTGGTCCCTTTTAGAGCTTATTATTACAGCAGAGAGGAAAAGCTTTTGGTTTATGATTACATGCCAATGGGAAGCTTGTCTGCACTTTTACATGGTAGTAGAGAGTCGGGAAGGACTCCTTTGAATTGGGAAGCAAGGTGTGGCATAGCCCTGGGAGTCGGCCGAGGGATTCATTATCTTCATTCTCAAGGCCCTACGATCTCTCACGGCAACATTAAGTCCTCAAACATTCTCCTCACACGATCATACGAAGCATGCGTATCCGACTATGGGCTTGCACAACTAGCCATGTCCCCCTCGACTCCAAGTCGTGTTGCTGGGTATCGAGCCCCAGAGGTTACCGATTCTCGAAAGGTATCACAAAAAGCAGATGTTTATAGCTTTGGAGTGTTGTTATTGGAGATGCTAACAGGAAAATCTCCTACACATTCTATTTTCAACGAGGAAGCTGTGGATCTTCCTAGATGGGTTCAATCTGTGGTTCAAGAGGAATGGACAGCTGAAGTGTTTGATGAACAACTACTTAGGTACCAAAATGTTGAAGAGGAAATGGTTCAACTCTTGGAACTTGCATTGCAATGCACAGTCCCGTATCCCGATAATCGTCCTGGCATGGATGAGATCGTTCGACGCATTGATGAACTTTGTCGATCAACCTCGCAAAAACAGAGCGAGGGGATTGAGAACAATGGAAATAATGGTATTTCCTCACAGTTTCATTCACTAAGCTCACCCCATCCACCATCTGCAGCGTAG 1932 47.83 MEFPQRFLAAVLLGFSFLAFVRTDLASDRAALVAFRAAMGGRPRLEWNLSDVSPCSWAGVNCDRNGVFELRLPAMGLSGELPMGLGNLTQLQTLSLRFNALSGRIPADFANLRGLRNLYLQGNLFSGEIPPFLFDLRNLVRLNMADNNFTGEISYGFNNLSRLATLYLQNNQFTGVVPELNLTLEQFNVSFNQLNGSIPTKLSSFPASSFEGNLLCGAPLLLCNSTTTEPSPKSKLSGGVIAGIVIGGLFVLALILVVLILVCQRKSKEKSESKEVVRTGGEVEVPGEKTTTVEGSSERINIDHLIAPKSSTKGGERDKKLVFFGNVGNVFDLEDLLRASAEVLGKGTFGTAYKATLETGMVVAVKRLKEMTAAEKEFREKMEEAGRMKHENLVPFRAYYYSREEKLLVYDYMPMGSLSALLHGSRESGRTPLNWEARCGIALGVGRGIHYLHSQGPTISHGNIKSSNILLTRSYEACVSDYGLAQLAMSPSTPSRVAGYRAPEVTDSRKVSQKADVYSFGVLLLEMLTGKSPTHSIFNEEAVDLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLELALQCTVPYPDNRPGMDEIVRRIDELCRSTSQKQSEGIENNGNNGISSQFHSLSSPHPPSAA* 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17491006 17493553 - CsaV3_3G021010.1 Csa03g02101 523006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02101 643 SUPERFAMILY Protein kinase-like (PK-like) 342 603 IPR011009 -
Csa03g02101 643 SMART LRR_typ_2 88 111 IPR003591 -
Csa03g02101 643 SMART LRR_typ_2 160 183 IPR003591 -
Csa03g02101 643 SMART LRR_typ_2 112 136 IPR003591 -
Csa03g02101 643 Pfam Protein kinase domain 341 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02101 643 ProSiteProfiles Protein kinase domain profile. 338 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02101 643 Gene3D Ribonuclease Inhibitor 25 181 IPR032675 -
Csa03g02101 643 Gene3D Ribonuclease Inhibitor 182 227 IPR032675 -
Csa03g02101 643 PANTHER OS05G0588300 PROTEIN 13 608 - -
Csa03g02101 643 SUPERFAMILY L domain-like 46 205 - -
Csa03g02101 643 CDD STKc_IRAK 344 607 - -
Csa03g02101 643 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Csa03g02101 643 MobiDBLite consensus disorder prediction 611 643 - -
Csa03g02101 643 PANTHER LRR RECEPTOR-LIKE KINASE 13 608 - -
Csa03g02101 643 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Csa03g02101 643 Gene3D Phosphorylase Kinase; domain 1 310 412 - -
Csa03g02101 643 Gene3D Transferase(Phosphotransferase) domain 1 413 630 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00495 Csa-Chr1:3287829 Csa03g02101 Csa-Chr3:17491006 0 dispersed
Csa03g02101 Csa-Chr3:17491006 Csa05g01619 Csa-Chr5:19188784 0 dispersed
Csa04g01851 Csa-Chr4:18200725 Csa03g02101 Csa-Chr3:17491006 4.20E-80 dispersed
Csa03g02101 Csa-Chr3:17491006 Csa01g00727 Csa-Chr1:4605115 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78002 PF00069 Pkinase 2.10E-38 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02101 - - csv:101221942 1194.87