Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02112 ATGATCTTTTCATGGAGGAAAAACAAATTGGGGTTTCTTACAAAGTTGAAGAAAGAACTTCCAGGTGTCGATTCCGGTTCGGAAATTGCGATTCCTTCACATTATATGTGTCCGATCTCGCTTGATTTGATGAAGGATCCTGTGATTTTGTCCACTGGGATTACTTACGATAGAGAGAGTATCGAGAAATGGATTGATGGGGGAAATTTTTCATGTCCTGTGACGAAACAGGATTTGACTGTTTTCGACCTAATCCCTAATCATGCGTTGAGGAGGTTGATCCAAGATTGGTGTGTTGCGAATCGTTCATACGGGATCGAGCGGATTCCGACGCCGCGGATTCCGGTCTCCCCGTATGAAGTTAAGGAGATTTGTTCGAGAATATCAATCGCGACTCAAAGAAGCGATTCGAAGAGGTGCAGTGAATTGATGGGTAAGATCAGGAATTGGGCGAAAGAGAGCGAGAGGAATCGGAGGTGTATTGTAAATGGAGGAACTGGGGATGTTTTAGCAGCCTCGTTTGAGCATTTTGCTGGTGTTTCGATTGAGAAACATGTGGGTTTGTTGGAGGAGATTTTATTGGTTTTGACTTGTGTATATCCAGTCGCCATTGAAGGCTTATCTAAGCTTGGATCTGCGGATTCTTTGAAATGCTTGGTTTCCTTCTTAGTCGGTAAAGATCTCTCTCCCAAACAGAGCGCAATTTTTGTTCTGAAAGAACTCTTGGCAGCTGATCGAAGATATGTTAATTCATTGGCTGCCATTGAAGGAGTATCTGAAGCTTTAGTTAGCATTATCAGGGATCCTCTTTGCCCCTCTGCTACAAAATCATCCCTTACAGCGATTTTCTACATGATTTTACCATCAGATATTGGCGAGAAAATGGCATTGAAATTTGTGGAACTCGGCTTGGTCTCTCAGCTACTAGAATTTTTGGTAGATGCAGAGAAAAGTCTATGTGAGAAAGCTTTGGGAATTTTGGATGGAATTTGTGATTACAAACAAGGGAGAGAGAAGCTTTACAATAATGCACTAACTATTCCACTCTTAGTCAAGAAGATCCTAAGAGTTTCAGAGTTAGCCACTGAATATTCTCTGTCAATATTGTTGAAGCTCTGCAAGAGTGGTGAGAAGGGCGAGAATGAGGTGAGAGTTGAAGCAGCCCAACTGGGTGCTTTCCAGAAGATATTGGTTCTCTTGCAGGTTGGTTGTGGTGGTGACATGAAAGACAAGGTCACTGAGATGTTGAAATTATTGAATCTCTACAAAGATAGGCTAGATTGTATTGATTCGTCCATGCATTTTAAGTACTTGAAAAAATCATTTTGA 1329 41.61 MIFSWRKNKLGFLTKLKKELPGVDSGSEIAIPSHYMCPISLDLMKDPVILSTGITYDRESIEKWIDGGNFSCPVTKQDLTVFDLIPNHALRRLIQDWCVANRSYGIERIPTPRIPVSPYEVKEICSRISIATQRSDSKRCSELMGKIRNWAKESERNRRCIVNGGTGDVLAASFEHFAGVSIEKHVGLLEEILLVLTCVYPVAIEGLSKLGSADSLKCLVSFLVGKDLSPKQSAIFVLKELLAADRRYVNSLAAIEGVSEALVSIIRDPLCPSATKSSLTAIFYMILPSDIGEKMALKFVELGLVSQLLEFLVDAEKSLCEKALGILDGICDYKQGREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEKGENEVRVEAAQLGAFQKILVLLQVGCGGDMKDKVTEMLKLLNLYKDRLDCIDSSMHFKYLKKSF* 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17706762 17710146 - CsaV3_3G021120.1 Csa03g02112 523017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02112 442 SUPERFAMILY ARM repeat 211 419 IPR016024 -
Csa03g02112 442 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Csa03g02112 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Csa03g02112 442 CDD RING-Ubox_PUB 37 77 IPR045210 -
Csa03g02112 442 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Csa03g02112 442 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 25 442 - -
Csa03g02112 442 SUPERFAMILY RING/U-box 25 107 - -
Csa03g02112 442 PANTHER WDSAM1 PROTEIN 25 442 IPR045185 GO:0061630
Csa03g02112 442 Gene3D - 121 417 IPR011989 -
Csa03g02112 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01598 Csa-Chr2:15120226 Csa03g02112 Csa-Chr3:17706762 2.49E-35 dispersed
Csa03g02112 Csa-Chr3:17706762 Csa05g01122 Csa-Chr5:11451621 1.79E-155 dispersed
Csa03g02112 Csa-Chr3:17706762 Csa03g03495 Csa-Chr3:31295374 4.19E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02112 - - csv:101220059 869.766