Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02120 ATGGAGAATTTAATGGGATTGTTGAGAATTCATGTGTTTAGAGGCGTGAATCTTGCTGTAAGAGATGTTTCCAGCAGTGATCCTTATGTTATTTTCAAGATGGGCAAACAGAAATTGAAGACTCGGGTAGTGAAGCAAAATATAAACCCAGAGTGGAACGAAGATCTAACTCTATCAATCCAAGACCCAAGTCTCCCTGTGAATGTGCTTGTATACGACAAAGATCTGTTTTCGCTTGACGATAAGATGGGGGATGCAGAGTTTGATGTTCGGCCATTTGTGGAAGCCGTAAAGATGAGATTGAACAATCTCCCAAGTGGAACCATCATAAGGAAAATTCAACCAAGTAGGGAGAATTGTTTGTCTGAAGAAAGTTGCATAATTTGGGTGAATGGACAAGTTATTCAAAAAATGTTTCTAAGGTTAAGAAATGTGGAGTCTGGTGAAATTGAGCTGCAGTTGCAATGGATTGATATTCCTGGCTCTAGAGGATTGTAG 498 39.56 MENLMGLLRIHVFRGVNLAVRDVSSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSIQDPSLPVNVLVYDKDLFSLDDKMGDAEFDVRPFVEAVKMRLNNLPSGTIIRKIQPSRENCLSEESCIIWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL* 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17897273 17899404 + CsaV3_3G021200.1 Csa03g02120 523025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02120 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Csa03g02120 165 Pfam C2 domain 6 92 IPR000008 -
Csa03g02120 165 Gene3D C2 domain 4 160 IPR035892 -
Csa03g02120 165 SMART C2_3c 7 102 IPR000008 -
Csa03g02120 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 1-LIKE 1 164 - -
Csa03g02120 165 CDD C2_ArfGAP 6 148 - -
Csa03g02120 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 164 IPR044562 -
Csa03g02120 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00436 Csa-Chr1:2737098 Csa03g02120 Csa-Chr3:17897273 1.97E-83 dispersed
Csa01g01548 Csa-Chr1:11098270 Csa03g02120 Csa-Chr3:17897273 2.53E-39 dispersed
Csa03g02120 Csa-Chr3:17897273 Csa05g02017 Csa-Chr5:23557147 4.20E-72 dispersed
Csa03g02120 Csa-Chr3:17897273 Csa01g00717 Csa-Chr1:4552877 2.22E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02120 - - csv:101218477 331.257