Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g02120 | ATGGAGAATTTAATGGGATTGTTGAGAATTCATGTGTTTAGAGGCGTGAATCTTGCTGTAAGAGATGTTTCCAGCAGTGATCCTTATGTTATTTTCAAGATGGGCAAACAGAAATTGAAGACTCGGGTAGTGAAGCAAAATATAAACCCAGAGTGGAACGAAGATCTAACTCTATCAATCCAAGACCCAAGTCTCCCTGTGAATGTGCTTGTATACGACAAAGATCTGTTTTCGCTTGACGATAAGATGGGGGATGCAGAGTTTGATGTTCGGCCATTTGTGGAAGCCGTAAAGATGAGATTGAACAATCTCCCAAGTGGAACCATCATAAGGAAAATTCAACCAAGTAGGGAGAATTGTTTGTCTGAAGAAAGTTGCATAATTTGGGTGAATGGACAAGTTATTCAAAAAATGTTTCTAAGGTTAAGAAATGTGGAGTCTGGTGAAATTGAGCTGCAGTTGCAATGGATTGATATTCCTGGCTCTAGAGGATTGTAG | 498 | 39.56 | MENLMGLLRIHVFRGVNLAVRDVSSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSIQDPSLPVNVLVYDKDLFSLDDKMGDAEFDVRPFVEAVKMRLNNLPSGTIIRKIQPSRENCLSEESCIIWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL* | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 17897273 | 17899404 | + | CsaV3_3G021200.1 | Csa03g02120 | 523025 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g02120 | 165 | ProSiteProfiles | C2 domain profile. | 1 | 103 | IPR000008 | - | |
Csa03g02120 | 165 | Pfam | C2 domain | 6 | 92 | IPR000008 | - | |
Csa03g02120 | 165 | Gene3D | C2 domain | 4 | 160 | IPR035892 | - | |
Csa03g02120 | 165 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
Csa03g02120 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 1-LIKE | 1 | 164 | - | - | |
Csa03g02120 | 165 | CDD | C2_ArfGAP | 6 | 148 | - | - | |
Csa03g02120 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 164 | IPR044562 | - | |
Csa03g02120 | 165 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 91 | IPR035892 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00436 | Csa-Chr1:2737098 | Csa03g02120 | Csa-Chr3:17897273 | 1.97E-83 | dispersed | |
Csa01g01548 | Csa-Chr1:11098270 | Csa03g02120 | Csa-Chr3:17897273 | 2.53E-39 | dispersed | |
Csa03g02120 | Csa-Chr3:17897273 | Csa05g02017 | Csa-Chr5:23557147 | 4.20E-72 | dispersed | |
Csa03g02120 | Csa-Chr3:17897273 | Csa01g00717 | Csa-Chr1:4552877 | 2.22E-81 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g02120 | - | - | csv:101218477 | 331.257 |