Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02160 ATGGCCACAAAGATCGACGGAATCGAAGATGAAGAAATTTCAAAGCTTGAAGAAGGCATTGTCGTTTCCGCCGTTGCTCGTTTCTGTCCCTCCAATTTAGTCGTCATCATCCAAAAGGTAATCGCGGAGTTGATCGGGACGTACTTCGTGATCTTCGGGGGATGTGGGGCGGTGGTGGTGAACAAAATATACGGATCAGTGACATTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTAATGGTAATGGTGTATTCGGTGGGACATGTCTCTGGAGCGCATTTCAACCCTGCTGTTACTCTCACATTCGCCCTTTTTCGTCGCTTCCCCTTCTGGCAGGTACCAATATACACAGGAGCTCAACTAATGGGGTCCCTTCTCGCAAGCTGCACATTGGATCTAATGTTTGAAGTGACCCCAGAAGCCTTCTTTGGGACAGTGCCCGTTGGATCCAATGTTCAATCTTTGGTTATTGAAATTATCATCACATTTCTCTTGATGTTTGTCATCTCTGGCGTCTCCACTGATAACAGAGCCGTAGGAGAATTAGGTGGAGTTATGGTTGGAATGACCATTCTCTTGAATGTTTTCGTCGCCGGGCCGATTTCGGGAGCTTCTATGAATCCAGCTAGGAGCCTTGGACCAGCAATAGTGAAACGGCAGTTTAAAGGATTATGGGTTTACATGTTAGGACCCTTGATCGGAGCGGTCGCCGGCGGATTTGTCTATAACCTCATGAGATACACAGACAAGTCGTTACGGGAGATCACCAGAAGCACCTCATTCCTCACCGGCACCCACAAATCATAA 810 47.53 MATKIDGIEDEEISKLEEGIVVSAVARFCPSNLVVIIQKVIAELIGTYFVIFGGCGAVVVNKIYGSVTFPGICVVWGLIVMVMVYSVGHVSGAHFNPAVTLTFALFRRFPFWQVPIYTGAQLMGSLLASCTLDLMFEVTPEAFFGTVPVGSNVQSLVIEIIITFLLMFVISGVSTDNRAVGELGGVMVGMTILLNVFVAGPISGASMNPARSLGPAIVKRQFKGLWVYMLGPLIGAVAGGFVYNLMRYTDKSLREITRSTSFLTGTHKS* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18624553 18628705 + CsaV3_3G021600.1 Csa03g02160 523065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02160 269 Gene3D Glycerol uptake facilitator protein. 8 258 IPR023271 -
Csa03g02160 269 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g02160 269 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g02160 269 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g02160 269 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g02160 269 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g02160 269 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g02160 269 PANTHER AQUAPORIN NIP4-1-RELATED 24 257 - -
Csa03g02160 269 CDD MIP 38 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g02160 269 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Csa03g02160 269 Pfam Major intrinsic protein 36 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g02160 269 TIGRFAM MIP: MIP family channel proteins 42 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g02160 269 SUPERFAMILY Aquaporin-like 35 255 IPR023271 -
Csa03g02160 269 PANTHER AQUAPORIN NIP2-1 24 257 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02160 Csa-Chr3:18624553 Csa06g03729 Csa-Chr6:29782797 3.71E-105 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02160 K09874 - csv:101215315 530.02