Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02176 ATGTCGGAATCCGGAAATTTTATCCTATTCAACGCTGAACGAAGCCCTGTTTGGCAAAGCTTTTCACACCCTTCTGATACCCTTCTCCCAAATCAACCTCTATCGGTCTCTTTAGAGCTAACAACGTCAAAATCCCCTTCCCATGGCGGATATTATACCCTAAAAATGCTCCAACAGCGCACCACTCTCAAACTTGCCTTGACGTTCAATTTGCCTGAAAGTTACGAGGGTTTGCCTGAATCTTACGCAAATTACTCGTACTGGTCCGCCCCTGAAATTTCCAATGTAACAGGGGAAGTCATTGCTGTTTTAGATGAAGGTGGAAGCTTCGGTGTGGTGTATGGTGACTCCTCTAATGGCGCGGTTTATGTTTACAAGAACGATAACGATAATGGGGGATTGTCAGCATCAACAAATCAGTCGATTCGTAATGTACGCACACAAGTTGTTCGACGATTGACCTTAGAGAGTAATGGGAACTTGCGTTTGTATCGCTGGGATGATGATGTCAATGGGTCTCGCCAATGGGTGCCAGAATGGGCGGCAGTTTCAAATCCTTGTGATATTGCTGGAATTTGTGGAAATGGGATTTGTTATTTGGATAAAAGCAAGACGAATGCGTCTTGTTCTTGCTTACCGGGGACTTTCAAGGACAACGGCGGCAGCCAGTGCTTTGAAAATTCATCGTCGGTGGGGAAATGTGGCGGCCAAAATCATCAATCTTCCTCGACTCAGTTCAGGATTTCTCCTGTTCAGCAAACAAATTATTATTACTCTGAGTTCTCTGTGATTGCAAATTACAGCGATATCAACACAGTAGCCAAATGTGGTGATGCTTGCTTAACTGATTGTGAGTGTGTTGCTTCTGTTTATGGGCTTGATGATGAGAAGCCTTACTGTTGGGTGTTGAGAAGCTTAGATTTTGGCGGATTTGAGGATGCTGGTTCGACTCTGTTTGTTAAGGTCAAGTCTAATGGCTCAATACCAGAAGCCAATGGGCCAGGAGGTGGAGGAGATTCTTCAGGAAGTGCTAAAGAAAAGGCTACGGTAATTCCTATTGTTCTGAGTATGGCTTTTCTGATTGGGCTGCTTTGTCTGTTGTTATATTATAATGTTCGTAGAAGGAGAGCTATGAAGAGAGCCATGGAAAGCTCTCTCATCTTGTCTGGTGCTCCCATTAGTTTTACCCACCGTGATTTGCAGGTCCGAACGAACAATTTCTCTGAGGTTCTTGGCACAGGGGGATTTGGAAGTGTATATAAAGGAAGCCTTGGAGATGGGACTCTTGTAGCTGTGAAGAAACTTGACAGAGTTTTTCCTCATGGAGAGAAAGAGTTTATAACTGAAGTTAACACAATTGGATCTATGCATCACATGAACTTGGTTCGGCTCTGTGGATACTGCTCAGAAGGATCACATAGGCTTCTAGTTTATGAGTTTATGAAAAATGGTTCATTGGACAAGTGGATATTTCCATCACATCATAATCAAGACAGAATTTTAGATTGGTCGACTCGGTTCCACATAGCAGTTGGCACAGCACAAGGGATTGCTTATTTCCATGAGCAATGCAGGAATAGGATCATACATTGTGATATCAAGCCAGAAAACATTCTGTTGGATGAAAACTTTTGTCCCAAAGTTTCAGATTTTGGTCTGGCTAAGCTGATGGGAAGAGAGCATTCACATGTTGTAACAATGGTGAGAGGAACAAGAGGGTATTTGGCTCCAGAGTGGGTTAGTAATCGCCCCATCACTGTTAAAGCTGATGTTTACAGCTATGGGATGCTTCTCTTGGAGATTGTTGGTGGCAGGAGAAACCTTGATATGTCTTTTGATGCTGAAGACTTCTTCTATCCCGGTTGGGCTTACAAGGAGATGAGGAATGAGACACATTTCAAAGTCGCAGATAGGAGACTAGAGGGTGCAGTGGAGGAAAAAGAGCTTATGAGAGCATTAAAAGTTGCATTTTGGTGCATTCAAGATGAAGTTGTCACGAGACCGACGATGGGTGACATTGTGAGGATGTTGGAAGGATCAATGGATGTCGACATGCCGCCAATGCCACAAACGGTGGTGGAGCTGGTTGAGGAAGGGTTGGATCAAGTTTATAGAGCCATGAAAAGAGACACCAATCAGTCAAGTTCCTTCACCATTAATAGCCAACCTTCATCTTCTTTGGCTACATGCAGCCATTCCACAATCTCTCCAAGATAG 2217 43.71 MSESGNFILFNAERSPVWQSFSHPSDTLLPNQPLSVSLELTTSKSPSHGGYYTLKMLQQRTTLKLALTFNLPESYEGLPESYANYSYWSAPEISNVTGEVIAVLDEGGSFGVVYGDSSNGAVYVYKNDNDNGGLSASTNQSIRNVRTQVVRRLTLESNGNLRLYRWDDDVNGSRQWVPEWAAVSNPCDIAGICGNGICYLDKSKTNASCSCLPGTFKDNGGSQCFENSSSVGKCGGQNHQSSSTQFRISPVQQTNYYYSEFSVIANYSDINTVAKCGDACLTDCECVASVYGLDDEKPYCWVLRSLDFGGFEDAGSTLFVKVKSNGSIPEANGPGGGGDSSGSAKEKATVIPIVLSMAFLIGLLCLLLYYNVRRRRAMKRAMESSLILSGAPISFTHRDLQVRTNNFSEVLGTGGFGSVYKGSLGDGTLVAVKKLDRVFPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSHHNQDRILDWSTRFHIAVGTAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMSFDAEDFFYPGWAYKEMRNETHFKVADRRLEGAVEEKELMRALKVAFWCIQDEVVTRPTMGDIVRMLEGSMDVDMPPMPQTVVELVEEGLDQVYRAMKRDTNQSSSFTINSQPSSSLATCSHSTISPR* 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18890047 18895816 + CsaV3_3G021760.1 Csa03g02176 523081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02176 738 SUPERFAMILY Protein kinase-like (PK-like) 385 678 IPR011009 -
Csa03g02176 738 Pfam Protein kinase domain 408 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02176 738 MobiDBLite consensus disorder prediction 712 738 - -
Csa03g02176 738 CDD STKc_IRAK 411 679 - -
Csa03g02176 738 Pfam S-locus glycoprotein domain 140 214 IPR000858 GO:0048544
Csa03g02176 738 SUPERFAMILY alpha-D-mannose-specific plant lectins 1 38 IPR036426 -
Csa03g02176 738 PIRSF SRK 1 731 IPR024171 GO:0004674
Csa03g02176 738 Gene3D Transferase(Phosphotransferase) domain 1 481 695 - -
Csa03g02176 738 ProSitePatterns Protein kinases ATP-binding region signature. 411 434 IPR017441 GO:0005524
Csa03g02176 738 ProSiteProfiles Protein kinase domain profile. 405 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02176 738 Gene3D Phosphorylase Kinase; domain 1 369 480 - -
Csa03g02176 738 PANTHER OS07G0415500 PROTEIN 1 738 - -
Csa03g02176 738 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 1 738 - -
Csa03g02176 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Csa03g02176 738 SMART serkin_6 405 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02176 - - - csv:101209399 1481.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02176 Csa-Chr3:18890047 Csa06g00474 Csa-Chr6:4016862 7.11E-131 dispersed
Csa03g02176 Csa-Chr3:18890047 Csa03g04335 Csa-Chr3:37882559 2.40E-131 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g814 . . . . . . . . . . . . . . . . . Bhi01g01426 . . . . . . . . . . . . . Cone1ag1203 Cone5ag0905 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g02176 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008718 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78003 PF00069 Pkinase 5.50E-47 CL0016 Csa PK