Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02180 ATGGTTGTATGGAACCTTGATGCGAAGGGTTTGAACTGTGAAATCAATCACATTGAGACAAGAAAGAGGAGGGAAATGGAGGCCATATGGGATGTGTTCTGTGGAGGTTACGACTGTTTCAATGGTAGTGAGAAACCTTGTGGTTTTGACTACAACTTTCTTTCTCGTTCCTCTCCATGTTTAACTCAAGCTTTGATCGTCAGTTTTGATGTTTTACTGTTCATCTTGCTTGTATCCAATATTGTGGAGAAGTCAATGAAAAGAGTTCACATGTCGTATCAAATTCGTAACAGTTCAGGTTTGCTGATTTTGTCTGCTATCTTCAATGGTTGTGTTGGATTGGTGTACCTTGGTTTAGGCATTTGGACTTTGGTGGAGAAGTTGAGGAAAGATCACACTGCTTTGCCTTTGCAGTTGTGGTTATCAACTTCCTTCCATGGCTTAACATGGTTATTGTTGAGCTCTATTGTTAGCTTATGGAGTAAACAGCTTCCAAGAGCCTTGTTGCGCCTATTGTCCATTGCAGCATTCGTGTTTGCTGGGGTTGTTTGTGCTCTTTCACTTTTTGATGTTGTTTCGAGTAAAATAGTATCAGCAAAGATGATTTTAGATGTTCTATCTGTTATGGGATCGGTTCTATTATTGCTTTTCTCTTTTGGTTTTTTTAGTTGCCAAGAGAGTGAAGAGAGTATAAATGGGAATGGACTTTACACCCTATTAATTGGTGAGGCTAATGAAAGTGGTAAGCTTGATCCTGTTACTCCGTTAGCCAAAGCTGGATTGCTGAGTAAAATTTCATTTTGGTGGATGAATCCTTTAATGAAAACGGGAAAGAAGAAGACTCTCAACATTGAAGATATACCGATGATGCGGGAGGCAGATCGAGCAGAAAGTTGTTACTTACAGTTCATAAACCAAATGAATGAACATAAAAGGAACGACCAAAGTTCTCAACCATCAGTCCCCAAAGTCATTCTTTTATGCCATCGAAGGGATATATTATTGTCAGGATTTTTTGCTTTGTTGAAAATACTTTTTGTCTCTGCTGGTCCTCTGCTTCTCAATGCCTTCATTTTGGTTGCTCAGGGACACCAAAGTTTCAAATATGAAGGTCTTGTGCTTGCCGTTTCACTCTTTTTTTCGAAAAGTATTGAATCCATATCACAAAGGCAATGGTACTTCAGAACCAAGCTTGTTGGTCTTAAAGTTAGATCTTTGCTCTCAGCAACTATTTATAAGAAGCAATTGCGATTGTCCAGTGAAGCTAAGTTGATGCACTCGAGTGGTGAAATCATGAACTACGTTACTGTAGACGCGTATAGGATTGGAGAATTTTCATTTTGGTTCCACCAAACTTGGACCACGAGCCTTCAACTATGTATTGCTCTTTTGATCCTCTATAAAGCAGTAGGAATAGCAACCATAGCCTCCCTTTTAGTGATAATTCTATGTGTAGTTGGGAATGCTCCAATTGCCAAGCTACAACATAAGTTTCAGAGTAAATTGATGGCGGCACAAGATGAGAGACTGAAAACGTTTACGGAGGCTCTTGTAAACATGAAAATTTTGAAGTTATATGCTTGGGAAACCCATTTCAAGAACGTAATTGAGAAGTTAAGAAAGGAGGAGCACAGGTGGTTGGCAGCCGTGCAATATAGAAAAGGATACAATGGCATTCTCTTTTGGTCATCTCCTGTTATTGTCTCTGTTGCAACCTTTGGGGCATGTAGTTTTTTGAACATTCCACTACATGCCAATAATGTGTTCACTTTTGTATCTGCATTGCGTCTTGTTCAAGAACCTGTCAGATCTATGGGCGATGTCATTGCAGCAATCATTCAAGCAAGGGTCTCTTTTACACGTATTGTTGACTTTCTGGAGGCACCTGAGCTGCAAAGTTCTAGCGTTCCTAGAAAGTGTGTGAATATGAATGATAACTACTCCATTCGGATCTGTTCAGCATCTTTCTCGTGGGAAGAGAATTCAGCGAGGCCTACTCTTCGTAATATAAATTTAGAGGTCAAGCCAGGTTCAAAGGTTGCAATATGTGGAGAAGTTGGCTCAGGAAAATCTACTCTTCTAGCGGCTATTCTTGGTGAAATTCCAAATGTTGAGGGAAATATCCAAGTTAATGGAAGAATTGCTTATGTGTCTCAAACAGCATGGATCCAAACAGGGTCCATACGTGATAACATTTTATTTGGCTCTGAAATGGACAATTGGAGATATCAAGAAACACTTGAGAAGTGTTCATTGATGAAGGACCTTGAGTTACTTCCTTACGGTGATCTCACTGAGATTGGGGAAAGAGGAGTAAATCTCAGTGGTGGACAAAAGCAAAGGATTCAACTTGCGCGTGCGCTATATCAAAATGCTGATATATATCTTTTAGACGATCCATTTAGTGCTGTTGATGCTCATACTGCCACAAGTTTGTTCAATGGATATGTTATGGAAGCGCTCTTGGGAAAAACTGTTCTTCTTGTGACTCATCAAGTTGATTTCTTACCTGCTTTTGAATCTGTCCTGCTGATGTCTGATGGGGAAATTCTAGAAGCAGCCGCTTACGACCAACTGTTAGCACATAGCAAAGAATTTCAGGACCTTGTCAATGCACACAAAGAAACTGTTGGTACTGGAAGCCTTGCAGATTTATCTGCTGCCAAGAGTTTGAGAACATCTAGTAAAGAGATAAAGAAATCCTTTACTGAGAAACTGTCGGTAATTTCTGATGCTAATCAGATAATTAAGCAGGAGGAGCGAGAAGTTGGAGACTCAGGATTCAAGCCTTATATTCAGTATTTGAATCAGAACAAAGGCTTCTTTTTCTTCTCCTTAGATGTTCTCTTCCAATTAGCATTTGTGGCATGTGGAATAACTCAAAACTCTTGGATGGCTACGAACGTTGACAATCCCAACGTCAGCACCTCGCGCCTGATCATAGTTTACTTGTTGATTGGAGTTACTTCAACATTATTCCTGGCTTCAAGAGCTCTTTTAACAGCTTTTTTAGGTCTGCAATCTTCAAAATCATTGTTTTCTCAACTACTCATATCTCTTTTTCGCGCACCGATGTCCTTCTATGATTCCACACCTCTTGGAAGGATACTTAGTCGGGTCTCAATGGATCTTAGTATTGTGGATCTTGATGTCCCGTTTAGTTTAATATTTTCTGTGGCTGCAACCTCCAATGCCTATGCCAGTCTTGGAGTTTTAGCCGTAATCACGTGGCAAGTTCTATTCATCTCCATACCTACAATCATTTTGGCAGTTTGCTTGCAGAGATACTATTTTGCTTCTGCTAAAGAACTCATGCGTCTTAACGGGACGACAAAGTCAATGGTAGCGAACCATTTGTCTGAATCCATAGCTGGAGCAATGATAATTCGAGCTTTTGAAGAGGAAGAGAGATTCTTTAAGAAAAATCTTGAATTTGTTGATGGAAATGCTAGTCCTTTCTTTCACAATTTTTCAGCAAACGAGTGGCTGATACAACGGTTAGAAATGCTCAGTGCAGTAGTCCTAGCCTCGGCTGCATTTTGCATAGTATTGCTACCAACCGGAAGTTTCAGCCCTGGTTTCATTGGAATGGCACTCTCTTACGGCCTTTCTTTAAATATGTCCTTGGTCTTCTCCATTCAAAATCAATGTAATTTAGCCAATCACATCATTTCTGTAGAAAGATTAAACCAATACATGCATTTATCAAGTGAGGCTCCCAAAATCATCGAAGCTAACCGTCCTCCAAGCAATTGGCCCTCTATCGGCAAAGTGGAGATAATTGACTTGAAGATTCGGTATAGACCCAATACGCCCCTTGTTCTTCATGGTATTAGTTGCACATTTGAAGGCGGACATAAGATTGGTATTGTTGGTCGGACTGGCAGTGGTAAATCTACCCTTTTAAGTGCCATATTCCGCTTGGTTGAGCCAGCAGGGGGAAAGATTATAGTTGACGGCATCGACATTTGTTCGATTGGACTTCATGACCTGCGTTCACGTTTTGGAATTATTCCTCAAGACCCAACCCTTTTTAAGGGGACTATTAGATACAATTTGGATCCCTTAGTTCAGCATAGTGACCATGAAATATGGGAGGTACTCGAAAAGTGTCAGCTAAGAGACGTTGTCGAAGAGCGGGAGGCAGGACTGGATTCCTTGGTTGTAGAAGATGGTTCAAACTGGAGCATGGGACAACGACAACTTTTCTGTTTAGGCCGTGCGCTTTTGAGGAGAAGTCGAATATTAGTGCTTGACGAAGCAACTGCATCAATTGACAATACGACTGATATGATTCTACAGAAAACTATTCGATCTGAATTTGCCGACTGTACTGTGATTACAGTTGCTCACAGAATACCAACTGTTATGGATTGCACAATGGTGCTTGCTATAAGTGATGGGAGAATAGCAGAATACGACAAACCAGCTACGTTGATCAAAAGAGAAGGCTCCCTATTTGGACAGTTAGTGAAAGAATACTGGTCTCACTCACAATCTGCACAATTGTTTTGA 4515 40.49 MVVWNLDAKGLNCEINHIETRKRREMEAIWDVFCGGYDCFNGSEKPCGFDYNFLSRSSPCLTQALIVSFDVLLFILLVSNIVEKSMKRVHMSYQIRNSSGLLILSAIFNGCVGLVYLGLGIWTLVEKLRKDHTALPLQLWLSTSFHGLTWLLLSSIVSLWSKQLPRALLRLLSIAAFVFAGVVCALSLFDVVSSKIVSAKMILDVLSVMGSVLLLLFSFGFFSCQESEESINGNGLYTLLIGEANESGKLDPVTPLAKAGLLSKISFWWMNPLMKTGKKKTLNIEDIPMMREADRAESCYLQFINQMNEHKRNDQSSQPSVPKVILLCHRRDILLSGFFALLKILFVSAGPLLLNAFILVAQGHQSFKYEGLVLAVSLFFSKSIESISQRQWYFRTKLVGLKVRSLLSATIYKKQLRLSSEAKLMHSSGEIMNYVTVDAYRIGEFSFWFHQTWTTSLQLCIALLILYKAVGIATIASLLVIILCVVGNAPIAKLQHKFQSKLMAAQDERLKTFTEALVNMKILKLYAWETHFKNVIEKLRKEEHRWLAAVQYRKGYNGILFWSSPVIVSVATFGACSFLNIPLHANNVFTFVSALRLVQEPVRSMGDVIAAIIQARVSFTRIVDFLEAPELQSSSVPRKCVNMNDNYSIRICSASFSWEENSARPTLRNINLEVKPGSKVAICGEVGSGKSTLLAAILGEIPNVEGNIQVNGRIAYVSQTAWIQTGSIRDNILFGSEMDNWRYQETLEKCSLMKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNGYVMEALLGKTVLLVTHQVDFLPAFESVLLMSDGEILEAAAYDQLLAHSKEFQDLVNAHKETVGTGSLADLSAAKSLRTSSKEIKKSFTEKLSVISDANQIIKQEEREVGDSGFKPYIQYLNQNKGFFFFSLDVLFQLAFVACGITQNSWMATNVDNPNVSTSRLIIVYLLIGVTSTLFLASRALLTAFLGLQSSKSLFSQLLISLFRAPMSFYDSTPLGRILSRVSMDLSIVDLDVPFSLIFSVAATSNAYASLGVLAVITWQVLFISIPTIILAVCLQRYYFASAKELMRLNGTTKSMVANHLSESIAGAMIIRAFEEEERFFKKNLEFVDGNASPFFHNFSANEWLIQRLEMLSAVVLASAAFCIVLLPTGSFSPGFIGMALSYGLSLNMSLVFSIQNQCNLANHIISVERLNQYMHLSSEAPKIIEANRPPSNWPSIGKVEIIDLKIRYRPNTPLVLHGISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPAGGKIIVDGIDICSIGLHDLRSRFGIIPQDPTLFKGTIRYNLDPLVQHSDHEIWEVLEKCQLRDVVEEREAGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNTTDMILQKTIRSEFADCTVITVAHRIPTVMDCTMVLAISDGRIAEYDKPATLIKREGSLFGQLVKEYWSHSQSAQLF* 1505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18917683 18927344 - CsaV3_3G021800.1 Csa03g02180 523085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02180 1504 ProSitePatterns ABC transporters family signature. 774 788 IPR017871 GO:0005524
Csa03g02180 1504 Gene3D ABC transporter type 1, transmembrane domain 310 627 IPR036640 GO:0005524|GO:0016021
Csa03g02180 1504 Gene3D ABC transporter type 1, transmembrane domain 908 1239 IPR036640 GO:0005524|GO:0016021
Csa03g02180 1504 SMART AAA_5 676 849 IPR003593 -
Csa03g02180 1504 SMART AAA_5 1284 1476 IPR003593 -
Csa03g02180 1504 Pfam ABC transporter 1275 1423 IPR003439 GO:0005524
Csa03g02180 1504 Pfam ABC transporter 667 801 IPR003439 GO:0005524
Csa03g02180 1504 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 649 872 IPR003439 GO:0005524
Csa03g02180 1504 CDD ABC_6TM_ABCC_D2 940 1233 IPR044726 GO:0140359
Csa03g02180 1504 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 948 1221 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa03g02180 1504 Pfam ABC transporter transmembrane region 334 601 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa03g02180 1504 Pfam ABC transporter transmembrane region 962 1205 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa03g02180 1504 Gene3D - 628 884 IPR027417 -
Csa03g02180 1504 CDD ABC_6TM_ABCC_D1 335 622 IPR044746 GO:0140359
Csa03g02180 1504 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 334 614 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa03g02180 1504 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 94 1502 - -
Csa03g02180 1504 SUPERFAMILY ABC transporter transmembrane region 933 1240 IPR036640 GO:0005524|GO:0016021
Csa03g02180 1504 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 94 1502 - -
Csa03g02180 1504 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1258 1492 IPR003439 GO:0005524
Csa03g02180 1504 SUPERFAMILY ABC transporter transmembrane region 327 630 IPR036640 GO:0005524|GO:0016021
Csa03g02180 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 872 IPR027417 -
Csa03g02180 1504 CDD ABCC_MRP_domain1 649 849 - -
Csa03g02180 1504 Gene3D - 1241 1493 IPR027417 -
Csa03g02180 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1250 1485 IPR027417 -
Csa03g02180 1504 CDD ABCC_MRP_domain2 1256 1476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02180 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - csv:101210136 2893.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02180 Csa-Chr3:18917683 Csa06g00731 Csa-Chr6:5987659 0 dispersed
Csa06g03837 Csa-Chr6:30397354 Csa03g02180 Csa-Chr3:18917683 0 dispersed
Csa03g02180 Csa-Chr3:18917683 Csa04g00072 Csa-Chr4:407923 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48