Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02181 ATGATGAAGAATAGCTTCATCTTCGTTGAAATTTTATTGTTTTTAGCATTTATCTCCTCGGGAGTTCTCACCGAGCCAGTTGAAGACAAGCAAGCCTTGCTTGATTTCTTCCATAATATCCCTCACTCCCCCTCTCTCAACTGGAATCAGAGTAGTTCTGTGTGCAAAGCCTGGACAGGAGTGTTTTGCAATTCTGATGAGTCTAAAGTAGTAGCCTTGCGATTACCCGGGACTGGTCTGCGCGGTCCGATCCCTGTGAATACTCTTAGCCGTCTATCTGCGCTTGAGATTCTAAGCCTTAGGTTAAATAGGATATCAGGTCCTTTCCCTTTTGATTTTTCGAAGCTGGGAAACTTGAGTTCCTTGTATCTGCAATATAACAAGTTTTCTGGTCCTTTGCCTTCAGATTTTTCAGTTTGGAATAACCTTAGTGTCATTGATCTATCAAACAATCTCTTCAATGGGAGTATTCCTTCCTCTATCTCAAAGTTGAGTCATTTGACAGTTCTGAATCTTGCAAACAACTCGTTTTCAGGCGAAATTCCGAACCTTGATATTCCAAGTTTGCAACGGTTAGATTTGTCCAATAATAATCTTACAGGAAATGTGCCTCACTCTCTTCAAAGATTTCCAAGTTGGGTGTTCGCTGGTAACAATGTTACTGAAGAACATAGTGCAATTCCCCCATCTTTTCCCCTCCAGCCTCCCACTGCTCAACCGACGAGAAAAGGCCGGCTGAGTGAATCTGCAATACTTGGTATTGCAATTGGTGGTTCTGTTATTGTGTTTATTTTTCTAGCTGTTCTTTTGACTGTTTGGTGGTTGAAAAAAGGGAAAGAAAATACGAGTCCCTCTATGGACCCCAAAAAGAAGGAATTGTCTGTGAAAAAAAGGGGCTTTGAGAGCCAAGAACAAAAGAACAACCTCAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCATCTGCCGAGGTTCTCGGGAAGGGAACCTTTGGAGTGAGTTACAAGGCAGCTTTGGAGGACTCGACAACGGTTGTAGTGAAGAGGCTGAATCAAGTGACAGTTGGAAAACGAGAATTTGAACAGCAGATGGAGTTGATTGGAAAAATTAAGCACGAGAATGTCGTTTCCTTAAGAGCATACTATTATTCAAAGGATGAGAAACTCATGGTCTACGACTACTATGGACAAGGGAGCGTGTCTGCAATGTTACATGGCAAGGAAGGGGATGGTTTACGTGTGTTAGATTGGGATACTAGGATGAAAATTGCCATTGGAGCGGCTCGAGGTCTTGCTCATATCCACACAGAAAATGGTGGAAAATGTACCCATGGAAATGTCAGAGCCTCAAACATCTTCCTCAACTCTAAAGGATACGGTTGTGTATCCGACGTTGGCTTGGCTGGGCTAATGAATTCAATTCCACTACCAGCCACAAGAACCCCTGGTTACCGAGCGCCTGAATTGACCGACACTCGGAGAGCATCAGAAGCAGCTGATGTCTACAGTTTCGGGGTGGTGCTACTGGAACTTCTGACTGGAAAATCTCCCATACACGTTGAAGGTTGTAATGAAGTTGTTAATTTAGTGAGGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTTGAGCTTCTCAGGTATCCAAACATAGAAGAAGAAATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCTGAACAGAGGCCAAAAATGATCGATCTAATGTTGAGAATCGAGCAAGTTCGGCAACACAGTACAGGAACCCAACCGTCATCAGGGTCAAAATCAGCGTATTCAACTCCGGTTCATGTAATGGAAATCGGTTCTTCCTCACATTTACCTTGA 1893 43.37 MMKNSFIFVEILLFLAFISSGVLTEPVEDKQALLDFFHNIPHSPSLNWNQSSSVCKAWTGVFCNSDESKVVALRLPGTGLRGPIPVNTLSRLSALEILSLRLNRISGPFPFDFSKLGNLSSLYLQYNKFSGPLPSDFSVWNNLSVIDLSNNLFNGSIPSSISKLSHLTVLNLANNSFSGEIPNLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFAGNNVTEEHSAIPPSFPLQPPTAQPTRKGRLSESAILGIAIGGSVIVFIFLAVLLTVWWLKKGKENTSPSMDPKKKELSVKKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSTTVVVKRLNQVTVGKREFEQQMELIGKIKHENVVSLRAYYYSKDEKLMVYDYYGQGSVSAMLHGKEGDGLRVLDWDTRMKIAIGAARGLAHIHTENGGKCTHGNVRASNIFLNSKGYGCVSDVGLAGLMNSIPLPATRTPGYRAPELTDTRRASEAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEQRPKMIDLMLRIEQVRQHSTGTQPSSGSKSAYSTPVHVMEIGSSSHLP* 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18942917 18946104 + CsaV3_3G021810.1 Csa03g02181 523086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02181 630 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515
Csa03g02181 630 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Csa03g02181 630 ProSiteProfiles Protein kinase domain profile. 326 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02181 630 SUPERFAMILY L domain-like 38 212 - -
Csa03g02181 630 Gene3D Ribonuclease Inhibitor 139 229 IPR032675 -
Csa03g02181 630 Pfam Protein tyrosine and serine/threonine kinase 330 591 IPR001245 GO:0004672|GO:0006468
Csa03g02181 630 Gene3D Transferase(Phosphotransferase) domain 1 402 615 - -
Csa03g02181 630 PANTHER OS05G0588300 PROTEIN 17 621 - -
Csa03g02181 630 Gene3D Ribonuclease Inhibitor 28 138 IPR032675 -
Csa03g02181 630 Gene3D Phosphorylase Kinase; domain 1 291 400 - -
Csa03g02181 630 PANTHER LRR RECEPTOR-LIKE KINASE 17 621 - -
Csa03g02181 630 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02181 Csa-Chr3:18942917 Csa05g00074 Csa-Chr5:375984 0 dispersed
Csa03g02181 Csa-Chr3:18942917 Csa05g00223 Csa-Chr5:1334228 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78004 PF07714 PK_Tyr_Ser-Thr 1.70E-32 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02181 - - csv:101207123 1250.73