Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02197 ATGGTTGATACTTTTGCTGATCTCTTCCAACAAAATGATGAATTTGTCGACCATACATTGAATCCCCATTTTGAGGGAGACGACCTCTTTAGCATCTTCGAGAGTTTGGAGAACGTTGCTGAGTTCACTATGATCGAAGATGATATTGAGCCTGTTAAAGATGGCGAAGAAACTACGAGCTTGGTCTTCTCTGAGACAGAGCTTGAGACTTCGCCAAAAACCAAGCGGTTGAAGACGATAGCGGCGACGTCTCCTACTGCTGCAATGACGTCGACCGGTCTTTCTTCCTCGGAGGATCCAAACCCTGATGGACCTCAAAGAATGTCGCATATTACGGTGGAACGTAACCGTAGGAAGCAAATGAACGAACACTTGACTGTCTTGAGATCACTCATGCCTTGCTTCTATGTCAAGAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAAGAGCTGCAACAAGTTCTCCAATCATTAGAAGCCAAAAAGCAAAGGAAAGTTGTTTATAGTGAAGTATTAAGCCCTAGGGTTGTTTCAAGTCCAAGGCCTAACTTAGCAATGAGTCCAAGAAAACCACCACTAAGCCCTCGCCTCAACCTGCCAATCAGTCCAAGAACTCCACAACCCACTAGCCCTTATAGCAAGCCTCCTCCAAGGTTGCAACAACCTCCCTCCGCCGCCACCGGTGGTGGTGCCTATAATATACCTTCAAGCAGCTCTAGTACCACCAATATGGCTAATAACAACTCATTAGAGCCATCTCCTTGTAATTCATGTTCGACCACAAATTCCTCAATTGACAATAATAATAATAATAATAATAGCAATAGCAATAGTAACAACAATAATGATCTTGTGGCAAATTCAAAATCAGCCATAGCTGAAGTTGAGGTGAAGTTTACAGGTCCAAATGTGGTTTTGAAGACAGTTTCTCCTCCAATCCCTGGTCAAGCTTTCAAGATTATTTCTGCACTTGAACAACTCTCCCTTGAAATTCTCCATGTCAAGATCACCACCCTTGATGAAACCATGTTTAACTCCTTCACAATTAAGATTGGAATTGAATGCCAACTTAGTGCAGAGGAATTGGCTCAACAAATTCAGCAAACATTCTGCTAA 1131 42.71 MVDTFADLFQQNDEFVDHTLNPHFEGDDLFSIFESLENVAEFTMIEDDIEPVKDGEETTSLVFSETELETSPKTKRLKTIAATSPTAAMTSTGLSSSEDPNPDGPQRMSHITVERNRRKQMNEHLTVLRSLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKKQRKVVYSEVLSPRVVSSPRPNLAMSPRKPPLSPRLNLPISPRTPQPTSPYSKPPPRLQQPPSAATGGGAYNIPSSSSSTTNMANNNSLEPSPCNSCSTTNSSIDNNNNNNNSNSNSNNNNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIPGQAFKIISALEQLSLEILHVKITTLDETMFNSFTIKIGIECQLSAEELAQQIQQTFC* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19073471 19076098 + CsaV3_3G021970.1 Csa03g02197 523102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02197 376 PANTHER TRANSCRIPTION FACTOR FAMA 1 376 IPR044283 GO:0003700|GO:0010052
Csa03g02197 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 181 IPR036638 GO:0046983
Csa03g02197 376 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 1 376 - -
Csa03g02197 376 SMART finulus 111 162 IPR011598 GO:0046983
Csa03g02197 376 Gene3D - 99 170 IPR036638 GO:0046983
Csa03g02197 376 CDD bHLH_AtFAMA_like 108 182 - -
Csa03g02197 376 MobiDBLite consensus disorder prediction 82 103 - -
Csa03g02197 376 MobiDBLite consensus disorder prediction 231 289 - -
Csa03g02197 376 MobiDBLite consensus disorder prediction 181 289 - -
Csa03g02197 376 MobiDBLite consensus disorder prediction 82 106 - -
Csa03g02197 376 MobiDBLite consensus disorder prediction 190 227 - -
Csa03g02197 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 156 IPR011598 GO:0046983
Csa03g02197 376 Coils Coil 149 169 - -
Csa03g02197 376 Pfam Helix-loop-helix DNA-binding domain 106 157 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02197 K20558 SPCH; transcription factor SPEECHLESS - csv:101211617 658.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02197 Csa-Chr3:19073471 Csa03g04599 Csa-Chr3:40003473 6.64E-06 dispersed
Csa05g00342 Csa-Chr5:2191536 Csa03g02197 Csa-Chr3:19073471 6.62E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g866 . . Bda05g00110 . Bpe03g00175 . Bma10g01285 . . Cmo18g01328 . . . . Sed07g0811 . Cpe14g00057 Bhi01g01450 Tan01g0149 Cmetu06g1760 . . Mch10g0088 . . . . . . . . Cone1ag0958 Cone5ag0651 Cone14ag0031 . . . . . Blo07g00350 Blo09g00040 . Bda15g00775 . Bpe12g00372 . . . . . Cma16g00072 Cma18g01299 Car16g00063 Car18g01215 Cpe09g00043 . . . . . . . . . . . . . . . . Csa03g02197 Chy06g01256 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008152 1 1 1 1 1 1 2 1 1 1 0 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31257 PF00010 HLH 1.00E-11 No_clan Csa TF