Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02199 ATGCTCTTAAGGATTTGTGCTAATGAATTGTTTGGTGATTCATCCCCAAGCGAAAATTTAGTCCTTTCCTTTCTGAAGACTTTTAGCCATTGTATTGTTTCGAGGCTACTTGGTATGGGAGTTGTGACTGTTTCAAGCGCTGCAGCACGAACTCCTTTTCGGCTGGGTGTGAAATTTTCTAATCACAGTTCTACATTGAAAAGACCATCGATTGTTGCTTTTAAAGCAGATAAGCACACAAACACGACACTGGTCTCACCCCACGAGCAAGTAACATTGCCTGTGGAGAGTAATAACAGAAGGAAGAAAAGATCAGGAAATACTAGCAAACCGTTGAAGAGAGTTAAAGCTGTCCTTATAGATGAAGCTACTCCATGTTCTCTGGATTTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATTTTCAAGCTTAGCCCTATGACTGAGGATTCTGATAAGGAGTGTAAAGATGGCAGATCAAAAAGAGGACAGAAAAGGAGCAAAAAATCAGCCAATAGACCAGGTGATGGCATTGTCAGGAACCAAACTAAGAGGATTAAGCGACTAGATCTCGATAAAAGGATTGCATTGAAAAACAAAAAGGAAGGCAAAGCGGTTGCTTTATTAAGGAAACAAAAAGATACTAAAAATGAAGCTGATGAGATTGATGGTCTGCTATTAAATCTTGAAAAGAGGATAGCATTGAAAAGTAACAAGGAAGGAAAAGCGGTTCCTTCATTAAGGAAACAGAAAGAAACCAAAAATGAAGATGATGAGATTGATAGGCTTGTAAGAGACTACTCTGCTTCAACTGATTTGGTTAGCTTAGACTGGAAGAAAATGAAGATTCCTCCTGTTCTTCCTTCATCAGAGCATACCCGCTTGTTCAAGTTGGTCCAGCCAATGAAGGCACTTGTTGAAGTACAAGAGGAGCTGCAGAAAGGGTTAGGAAGAGAACCAACTGAAGGGGAATTGGCAAATGCAACGAATATGAATGTAATTCAAGTAAGGAGACAACTGGAGGTCGGTCGTGCTGCCAGAAATAAGCTCATTAAGCACAATCTACGCCTTGTATTATTTGTAATCAACAAATACTTTGAAGATTTTGCAAGTGGGCCAAAATTTCAAGACCTTTGTCAAGCAGGAGTCAAGGGACTCATTACAGCAATTGATCGATTTGAGCCAAAGAGGAAATTTCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATTATCCGGTCAATGACTCTGTCAAGCTTCACACGTGTCTCATTTGGACTTGATTCGGTAAGAGTTGAAATTCAAAGAGCTAAACTTGAGTTATTATGTGAGCTTCATAGATTACCAACAGAGGGAGAGATAACTGCAAAAGTTGGCATCTCACAAGAGAGGTACCTAGAAGTAATGAGAGCTACAAAACCAGTTTACTCTCTCCATTCAAGGCACTCAACTACATCGGAAGAGTTGATCAATGGGATCACTGATGTAGAAGGCACGGGAGGTGACAACCGAAGGCAACCAGCTCTTCTGAGGCTTGCTTTAGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATACGGTCTCGATGGCAAAGGAAACCGAACATTAGGTGAGATAGCCGGAAATCTAAATATTTCAAGGGAAATGGTTCGAAAGCATGAAGTGAAAGCTCTCATGAAGCTGAAGCATCCTGCAAGAGTCGATTACCTTCGTAGGTATTTAATCTGA 1758 40.73 MLLRICANELFGDSSPSENLVLSFLKTFSHCIVSRLLGMGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNNRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKDGRSKRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKNEADEIDGLLLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI* 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19086463 19090647 + CsaV3_3G021990.1 Csa03g02199 523104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02199 585 Pfam Sigma-70, region 4 520 573 IPR007630 GO:0003700|GO:0006352|GO:0006355
Csa03g02199 585 Gene3D - 342 419 - -
Csa03g02199 585 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 269 418 IPR013325 GO:0003700|GO:0006352|GO:0006355
Csa03g02199 585 MobiDBLite consensus disorder prediction 149 181 - -
Csa03g02199 585 PRINTS Major sigma-70 factor signature 378 391 IPR000943 GO:0003700|GO:0006352|GO:0006355
Csa03g02199 585 PRINTS Major sigma-70 factor signature 402 410 IPR000943 GO:0003700|GO:0006352|GO:0006355
Csa03g02199 585 PRINTS Major sigma-70 factor signature 524 536 IPR000943 GO:0003700|GO:0006352|GO:0006355
Csa03g02199 585 PRINTS Major sigma-70 factor signature 545 560 IPR000943 GO:0003700|GO:0006352|GO:0006355
Csa03g02199 585 PRINTS Major sigma-70 factor signature 560 571 IPR000943 GO:0003700|GO:0006352|GO:0006355
Csa03g02199 585 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 432 488 IPR013324 -
Csa03g02199 585 Pfam Sigma-70 region 3 306 346 IPR007624 GO:0003700|GO:0006352|GO:0006355
Csa03g02199 585 Pfam Sigma-70 region 3 435 499 IPR007624 GO:0003700|GO:0006352|GO:0006355
Csa03g02199 585 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 347 573 IPR014284 GO:0003700|GO:0006352|GO:0006355
Csa03g02199 585 Pfam Sigma-70 region 2 351 417 IPR007627 GO:0003700|GO:0006352|GO:0006355
Csa03g02199 585 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 40 226 - -
Csa03g02199 585 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 228 585 - -
Csa03g02199 585 Gene3D - 508 585 IPR036388 -
Csa03g02199 585 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 511 584 IPR013324 -
Csa03g02199 585 Gene3D - 298 341 IPR036388 -
Csa03g02199 585 Gene3D - 424 476 IPR036388 -
Csa03g02199 585 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 40 226 - -
Csa03g02199 585 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 228 585 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02199 K03093 sigI; RNA polymerase sigma factor - csv:101208584 1049.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02199 Csa-Chr3:19086463 Csa06g00636 Csa-Chr6:5321982 1.03E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g868 Blo06g01076 . . . . . . . Cmo16g00073 Cmo18g01330 . . . . Sed07g0818 . Cpe14g00055 Bhi01g01453 Tan01g0146 Cmetu06g0694 . Hepe07g0087 . . . . . . . . . . . Cone14ag0030 Cone15ag0032 . . . . . . . Bda15g00776 . Bpe12g00373 . . . . . Cma16g00070 Cma18g01301 Car16g00061 Car18g01217 Cpe09g00041 . . . . . . . . Cla05g00949 Cam05g1040 Cec05g1045 Cco05g1039 Clacu05g1031 Cmu05g0981 Cre05g1060 . Csa03g02199 Chy06g01254 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005753 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38