Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02235 ATGTGGAATGACCAATTACAAGTTTTAAATGCACTTGATGTAGCTAAAACAAAATGGTATCACTTTACAGCAAACATCATTACTGGAATGGGATTCTTCACTGATGCATATGATCTATTTTGTATTTCTCTTGTAACCAAATTACTTGGAAGAATATATTATCATGTTGATGGTGCACTAAAGCCAGGGACATTGCCTCCAAATGTTGCTGCTGCTGTTAATGGTGTGGCATTTGTTGGAACGTTATCAGGAAAACTCTTCTTTGGTTGGTTCGGTGACAAAATGGGAAGAAAGAGAGTTTATGGTATGACTCTAAAGTCTCTAGTGCTTATGGTTATATGTGCTCAGGACTTTCCGTTGGTCACAATTCACATTCACTTTGTTTCTTTCGATTTCGGCTTGGTTTCAGTATTGATGGTGATTACCTCTTTTGACGAGGATCGTGTCGGAGTATTCAAATAA 462 37.45 MWNDQLQVLNALDVAKTKWYHFTANIITGMGFFTDAYDLFCISLVTKLLGRIYYHVDGALKPGTLPPNVAAAVNGVAFVGTLSGKLFFGWFGDKMGRKRVYGMTLKSLVLMVICAQDFPLVTIHIHFVSFDFGLVSVLMVITSFDEDRVGVFK* 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19645056 19645517 - CsaV3_3G022350.1 Csa03g02235 523140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02235 153 SUPERFAMILY MFS general substrate transporter 11 114 IPR036259 -
Csa03g02235 153 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 116 - -
Csa03g02235 153 Gene3D MFS general substrate transporter like domains 21 143 IPR036259 -
Csa03g02235 153 PANTHER HIGH AFFINITY INORGANIC PHOSPHATE TRANSPORTER 1 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02235 Csa-Chr3:19645056 Csa06g00361 Csa-Chr6:2938148 6.32E-45 dispersed
Csa02g01063 Csa-Chr2:10325177 Csa03g02235 Csa-Chr3:19645056 7.37E-56 wgd
Csa03g01215 Csa-Chr3:9373442 Csa03g02235 Csa-Chr3:19645056 6.26E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02235 K08176 - csv:101216693 301.597