Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02237 ATGGAATCCTCTTACTTTTCGTTTTCCGATTCAGATTTCTCGACGGATTCTTCATTCGGATCAACTGAATCATCGTTCTCATGGACTGATTTTTTATCAATCCACAGTGCGCTAGAAAACTCAATCGGAATCGAAGAGTTTCTCGGGAAACAAAAATTGGATTCGGAATCGAAAATCGTAGTGAAAGAAGAAATCGAAGTTAACTCGATCGATTTTAAGGAGGAGAAACAGAGGAAGACGACGGAGAAGAGTTACAGAGGTGTGAGACGGCGGCCATGGGGTAAATACGCGGCGGAGATTAGGGATTCAACGAGACATGGAGTTAGGGTTTGGCTTGGAACTTTTGACAGCGCTGAAGCTGCTGCTTTAGCTTATGATCAAGCGGCATTTTCGATGAGAGGAACAATGGCGGTGTTGAATTTTCCGGTGGAAATGGTGAGGGAATCATTACAGGATATTGAGTATGAATTGGAAGAGGGATGTTCGCCGGTGGTAGCCTTGAAGAGGAAACACTCAATGAGAAGGAAGTCGGTGGCGGCGGCGACGGCGGCGGTGGCGGTGGAGAAGAAGAAGATGAAGAAAAAGAACAATGTGGTGATTTTGGAAGATTTGGGAACAGAGTATTTGGAGGAACTTTTGATGTTAAGTTCATGTTAA 657 44.6 MESSYFSFSDSDFSTDSSFGSTESSFSWTDFLSIHSALENSIGIEEFLGKQKLDSESKIVVKEEIEVNSIDFKEEKQRKTTEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGTMAVLNFPVEMVRESLQDIEYELEEGCSPVVALKRKHSMRRKSVAAATAAVAVEKKKMKKKNNVVILEDLGTEYLEELLMLSSC* 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19674392 19675184 - CsaV3_3G022370.1 Csa03g02237 523142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02237 218 CDD AP2 83 143 IPR001471 GO:0003700|GO:0006355
Csa03g02237 218 PANTHER DNA-BINDING DOMAIN 53 215 IPR044808 GO:0003700|GO:0009873
Csa03g02237 218 Gene3D AP2/ERF domain 83 144 IPR036955 GO:0003700|GO:0006355
Csa03g02237 218 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Csa03g02237 218 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Csa03g02237 218 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Csa03g02237 218 SUPERFAMILY DNA-binding domain 84 144 IPR016177 GO:0003677
Csa03g02237 218 Pfam AP2 domain 84 134 IPR001471 GO:0003700|GO:0006355
Csa03g02237 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 53 215 - -
Csa03g02237 218 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g02237 Csa07g01649 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02237 Csa-Chr3:19674392 Csa07g01649 Csa-Chr7:16919258 6.04E-50 dispersed
Csa02g01071 Csa-Chr2:10411032 Csa03g02237 Csa-Chr3:19674392 1.61E-50 wgd
Csa03g01217 Csa-Chr3:9386136 Csa03g02237 Csa-Chr3:19674392 2.46E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31262 PF00847 AP2 1.10E-14 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02237 K14516 - csv:101220325 359.762