Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02257 ATGACGGGGTCTGGTTCTCCTTGTGGAGCTTGTAAATTCTTGAGAAGAAAATGTGTAAGAGGATGTGTTTTTGCACCATATTTTTGCCATGAACAAGGTGCTACTCATTTTGCTGCCATTCATAAAGTGTTTGGAGCAAGTAATGTTTCTAAGCTTCTTGCTCGTCTTCCTATTACTGAAAGATGTGAGGCTGCTGTTACTATTTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCTATTTATGGCTGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTTGTGAGTCTTCAGGCACAACTTGCTTCTTTGAAGGAACAAGCAGCGGAAAGCATTATGAACGCGTCCAGTAACGTGGGCGGGGTGAACGAGAAGGTCAATAGTAGAAAGGTTCCTTCTCACCCCCAAGATCTCCATAGTTGGTTTCAATCGGAGCAACCAAATGTAACACTTGAGTTCAATCCAAATCCAACTCCGAATAATAATTGTGCATCAAACGCTAATTATTATGATGAGAATTATCGCATTATGGTGAATTCACAATCCAATGGGAACTATGAGAACCATCACATTGCAAAAATGGAGGAAAGTGGATCATACGGAAGCTTTGAAGAAACCTCAGGCTATTCAATGTATACTCTCGATCAATTGCATTCAAATGTTCAACAATGGAGCTTCAGTGATACGGTTGATGATTTACAATCAGTTGCTTTTGGCAATAGACATTGGTGA 732 40.44 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPITERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESIMNASSNVGGVNEKVNSRKVPSHPQDLHSWFQSEQPNVTLEFNPNPTPNNNCASNANYYDENYRIMVNSQSNGNYENHHIAKMEESGSYGSFEETSGYSMYTLDQLHSNVQQWSFSDTVDDLQSVAFGNRHW* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19991861 19993443 + CsaV3_3G022570.1 Csa03g02257 523162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02257 243 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Csa03g02257 243 Coils Coil 87 114 - -
Csa03g02257 243 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 240 - -
Csa03g02257 243 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Csa03g02257 243 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02257 Csa-Chr3:19991861 Csa07g01611 Csa-Chr7:16618861 1.44E-60 dispersed
Csa03g02257 Csa-Chr3:19991861 Csa03g02259 Csa-Chr3:20013939 1.91E-56 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31265 PF03195 LOB 1.30E-35 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02257 K13945 - csv:101214764 498.434