Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g02259 | ATGTTCCCTAATAACACAACACACAAACCTTCCATGTCTCCCTTTCACACTCCTTTATATAAGAAAAACCACACGCCCACTCCCTTATCCCCTTTACTCTCTTCTTTCTTTGCACTTTTTTCTAGTCTACTCGTGCACGGCCATTTCTTCTATTTTCCCATGGCTTCTTCTTCTTCTACATCCACCAACACAAGCATGTCGGGGGGAGGTGGCGGCAGTGGCAGTGGCGGTGGCGGTGGTTCCCCGTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATATTTGCTCCTTATTTTTGTTCAGAACAAGGGGCTGCACGATTTGCTGCCATTCATAAGGTCTTTGGAGCAAGTAATGTCTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCCTATGAAGCTCAAGCAAGGATTCACGATCCTGTTTATGGTTGTGTTGCTCATATTTTTGCTCTTCAACAACAGGTGGCATACTTGCAAACACAGCTGATGCATGCCAAGGCTCAACTTGCAGAAACCCTAATGGATTCAGGAAGTAATATGGAGATTCAATGGACAGGCGATTTCAATAACAACAATCTCTCCAATGGATCAATTCCAAGTAATAATTATCAAACTCAAATTACGAACAACCCAAGCCCACAAAGCTCTCTAGAATCAGCTGCCAACAATGATGAAGCATTGTTATTCATTAATCAAAATCAATTATTTCATGAGAGCCAATTAAGCAGATCATCACAAGAACCTCAATTTCTTCAACCATTTCCCAGAAAAAAATTACCTTCTTCTTCTCATGCTGATCTTGGGGAACTCCATGCTTTGGCCCTTAGAATGATGAGAAATTAA | 885 | 41.58 | MFPNNTTHKPSMSPFHTPLYKKNHTPTPLSPLLSSFFALFSSLLVHGHFFYFPMASSSSTSTNTSMSGGGGGSGSGGGGGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMHAKAQLAETLMDSGSNMEIQWTGDFNNNNLSNGSIPSNNYQTQITNNPSPQSSLESAANNDEALLFINQNQLFHESQLSRSSQEPQFLQPFPRKKLPSSSHADLGELHALALRMMRN* | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 20013939 | 20015801 | - | CsaV3_3G022590.1 | Csa03g02259 | 523164 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g02259 | 294 | ProSiteProfiles | LOB domain profile. | 81 | 183 | IPR004883 | - | |
Csa03g02259 | 294 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 16 | 75 | 293 | - | - | |
Csa03g02259 | 294 | Pfam | Lateral organ boundaries (LOB) domain | 82 | 180 | IPR004883 | - | |
Csa03g02259 | 294 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 75 | 293 | - | - | |
Csa03g02259 | 294 | MobiDBLite | consensus disorder prediction | 207 | 232 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g02259 | Csa-Chr3:20013939 | Csa03g03758 | Csa-Chr3:33323707 | 2.09E-51 | dispersed | |
Csa03g02257 | Csa-Chr3:19991861 | Csa03g02259 | Csa-Chr3:20013939 | 1.91E-56 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31266 | PF03195 | LOB | 3.80E-36 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g02259 | K13944 | - | csv:101214521 | 443.351 |