Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02259 ATGTTCCCTAATAACACAACACACAAACCTTCCATGTCTCCCTTTCACACTCCTTTATATAAGAAAAACCACACGCCCACTCCCTTATCCCCTTTACTCTCTTCTTTCTTTGCACTTTTTTCTAGTCTACTCGTGCACGGCCATTTCTTCTATTTTCCCATGGCTTCTTCTTCTTCTACATCCACCAACACAAGCATGTCGGGGGGAGGTGGCGGCAGTGGCAGTGGCGGTGGCGGTGGTTCCCCGTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATATTTGCTCCTTATTTTTGTTCAGAACAAGGGGCTGCACGATTTGCTGCCATTCATAAGGTCTTTGGAGCAAGTAATGTCTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCCTATGAAGCTCAAGCAAGGATTCACGATCCTGTTTATGGTTGTGTTGCTCATATTTTTGCTCTTCAACAACAGGTGGCATACTTGCAAACACAGCTGATGCATGCCAAGGCTCAACTTGCAGAAACCCTAATGGATTCAGGAAGTAATATGGAGATTCAATGGACAGGCGATTTCAATAACAACAATCTCTCCAATGGATCAATTCCAAGTAATAATTATCAAACTCAAATTACGAACAACCCAAGCCCACAAAGCTCTCTAGAATCAGCTGCCAACAATGATGAAGCATTGTTATTCATTAATCAAAATCAATTATTTCATGAGAGCCAATTAAGCAGATCATCACAAGAACCTCAATTTCTTCAACCATTTCCCAGAAAAAAATTACCTTCTTCTTCTCATGCTGATCTTGGGGAACTCCATGCTTTGGCCCTTAGAATGATGAGAAATTAA 885 41.58 MFPNNTTHKPSMSPFHTPLYKKNHTPTPLSPLLSSFFALFSSLLVHGHFFYFPMASSSSTSTNTSMSGGGGGSGSGGGGGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMHAKAQLAETLMDSGSNMEIQWTGDFNNNNLSNGSIPSNNYQTQITNNPSPQSSLESAANNDEALLFINQNQLFHESQLSRSSQEPQFLQPFPRKKLPSSSHADLGELHALALRMMRN* 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20013939 20015801 - CsaV3_3G022590.1 Csa03g02259 523164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02259 294 ProSiteProfiles LOB domain profile. 81 183 IPR004883 -
Csa03g02259 294 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 75 293 - -
Csa03g02259 294 Pfam Lateral organ boundaries (LOB) domain 82 180 IPR004883 -
Csa03g02259 294 PANTHER LOB DOMAIN CONTAINING PROTEIN 75 293 - -
Csa03g02259 294 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02259 Csa-Chr3:20013939 Csa03g03758 Csa-Chr3:33323707 2.09E-51 dispersed
Csa03g02257 Csa-Chr3:19991861 Csa03g02259 Csa-Chr3:20013939 1.91E-56 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31266 PF03195 LOB 3.80E-36 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02259 K13944 - csv:101214521 443.351