Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02273 ATGGACTCTCATCAACTCTTTGGATTTGGGGTTAATAGTGCTGCTGGTCTTTCATTTACACCTTCCTGTTCCTCTGTTCCTTCTTTACCTAATACTTTGCTTGGACCCTTGAAATTCAATTTAAGTAATTCCCCGGCTTTGTCTCCGCTATTCTCTTCGCATTTTGAATTCGATTCCTTTACGACGACGACTGTGAGTGATAGTCCGGATCAAAGAAACTCCCCAGATAATCTCTCTGGACTCAGCCCTTCTTGCAATTCCTCCTTTGAAACCAGTAGCTTTAATCAAATAGCTTCATCGTATTTGGATACTTTTGAGGACGAGAGTCGGCAATTGTATTCGAGGTCGAATGCGTTTGTTTATGACGGATGCTCCACTGAGAACATAAGCTATACTTTGAAACAATTGGAGAGTGTTCTGATGGGGCCGGATAATGAGGAAGTTGTGAACAAGCCTGATGTTTCGTTTGGAGTGAGTGGCAGGCCACAGATGATGGGGCCGAGGTCTTACTCATGGAGCCAAGATCGACATGGTGGGTCCTATGGTGTTCAGTCTCAGGCGTCGCCAGTGTCGAGAAGCCAGAAATCCGAGGCAGTTCACTTGGGGAAACGACAGAAATCGATGGATGAATCATTGTTGCAGCAGCAGGGAGGATTGCCATCGGATAATTTGAAAGACTTGTTGATTGCTTGTGCAAAAGCTTTATCTGACAACAGGATGAAGGATTTTGATAACTTGGTTGCTACAGCAAGAGGCGCCGTGTCTATTGGTGGAGAGCCAATCCAGCGTCTTGGCGCTTACATGGTGGAAGGGTTGGTGGCCAGGAAAGAGGAATCGGGGGCAAATATATATCGAGCTCTCAACTGTAGGGAGCCTGCAAGTGATGATTTGCTTTCTTATATGCATATGCTATATGAAATCTGCCCCTACTTGAAGTTTGGTTACATGGCAGCGAACGGGGCGATTGCTGAAGCCTGTAGAAACGAAGACCGCATCCACATCATAGACTTCCAGATTACTCAGGGAACGCAGTGGTTAACTCTTCTTCAGGCACTTGCAGCAAGGCCTAGTGGGGCTCCCCATGTGAGAATAACTGGTATTGATGACCCTGTTTCTAAATATGCCCGTGGCGATGGGTTGGAGGTTGTGGAGAGGCGGTTGGCCGAAATCTCCATCAAGTATGGAATACCAGTGGAGTTTCATGGAATGCCTGTTTTTGCTCCACACATCACGCGTGATATGCTCGACATCAGACCCGGGGAGGCTTTGGCTGTAAACTTCCCATTGCAACTTCATCATACCCCAGACGAAAGCGTGGATGTGAACAATCCACGCGACGGTTTGCTGAGAATGGTGAAGTCGTTATCTCCAAAGGTAGTAACTTTGGTAGAGCAAGAATCAAACACCAACACAACCCCTTTCTTCAACAGGTTTTTGGAAACTTTAGATTACTACTTAGCAATCTTTGAGTCCATTGATGTCACTCTACCAAGGAACAACAAGAAGCGCATCAATGTTGAGCAACATTGTTTGGCCAAAGATATTGTTAACGTCATCGCTTGTGAGGGGAGGGATCGAGAAGAGCGCCATGAGCTCTTTGGCAAGTGGAAATCGAGGTTGACAATGGCAGGGTTCCGCCAGTCCCCATTGAGCTCTTACGTCAACTCTGTCATTAGGAGTCTGCTCAAGTATTATTCGGATCATTACACGCTTGACGAAAAGGATGGAGCTATGCTGCTGGGATGGAAAAACAGGAACCTGATATCTGCCTCGGCTTGGTATTAA 1785 46.44 MDSHQLFGFGVNSAAGLSFTPSCSSVPSLPNTLLGPLKFNLSNSPALSPLFSSHFEFDSFTTTTVSDSPDQRNSPDNLSGLSPSCNSSFETSSFNQIASSYLDTFEDESRQLYSRSNAFVYDGCSTENISYTLKQLESVLMGPDNEEVVNKPDVSFGVSGRPQMMGPRSYSWSQDRHGGSYGVQSQASPVSRSQKSEAVHLGKRQKSMDESLLQQQGGLPSDNLKDLLIACAKALSDNRMKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPASDDLLSYMHMLYEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQITQGTQWLTLLQALAARPSGAPHVRITGIDDPVSKYARGDGLEVVERRLAEISIKYGIPVEFHGMPVFAPHITRDMLDIRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVVTLVEQESNTNTTPFFNRFLETLDYYLAIFESIDVTLPRNNKKRINVEQHCLAKDIVNVIACEGRDREERHELFGKWKSRLTMAGFRQSPLSSYVNSVIRSLLKYYSDHYTLDEKDGAMLLGWKNRNLISASAWY* 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20205425 20207209 - CsaV3_3G022730.1 Csa03g02273 523178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02273 594 MobiDBLite consensus disorder prediction 155 206 - -
Csa03g02273 594 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 593 IPR005202 -
Csa03g02273 594 ProSiteProfiles GRAS family profile. 215 594 IPR005202 -
Csa03g02273 594 Pfam GRAS domain family 224 593 IPR005202 -
Csa03g02273 594 MobiDBLite consensus disorder prediction 63 84 - -
Csa03g02273 594 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 20 593 - -
Csa03g02273 594 MobiDBLite consensus disorder prediction 166 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02273 Csa-Chr3:20205425 Csa06g03453 Csa-Chr6:28391622 1.35E-149 dispersed
Csa03g02273 Csa-Chr3:20205425 Csa06g00941 Csa-Chr6:7561913 1.90E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31267 PF03514 GRAS 1.70E-126 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02273 - - csv:101216606 1170.99