Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02277 ATGCCAACAGTTTGGTTTTCTTTGAAAAAGTCTTTCCCTTGCAAACCAGAGCCATCTGAAGTCTATGATCCAAAGAACAGGAAACAACTCAACACAATCACAACTAAGAAAGCATCCAGAAAGTCAGGTTGTTCTTCTGGAAGGTCTGGTTGTTCAAGGTCCATAGCAAATCTCAAAGATGTAATCCATGGAAGCAAGAGGCACATGGAAAAACCACCGATATGCAGCCCGAGATCGATCGGTAGCAGCGAGTTCCTCAACCCAATTGCTCATGAAGTCATACTAAGCAACTCCAAGTGTGAGCTCAAGATCACTGGTTTTGGAAGCTTCCACCAAGAGGATGTGGGAAGTGCTGGCTTTGGCGGGGGTGGGGGTGGGGGTGGGGGTGGGAATTCGCCATTTTTCGGTACACTAAGACCCGGAACTCCTGGTCCTGGGGAGCACTTTGTTAACAACTCCAATTCTCCTTTTAATAATACTTCCATGTCTGGTGCAAGAAAGGTTCCTTCTCTTTTATCATATAGAGATGGGTCTGCAGCTGGGAGTACTGCTAAATCTAAGGTGAGTGGGGAAGTTCATCCAAGCAAAAGATTCTCCCCGCTAACTGAATTGAACGGTAATACGTTTTCGACGGTTACTTGCCATAAATGTGGAGAGCAGTTCTGCAAATTGGAAGCTGCTGAGTCTCACCATCTCTCTAAGCATGCTGTTACCGAGCTTGTGGAAGGCGATTCATCAAGAAAAATTGTTGAAATAATATGTCGAACGAACTTGTTGAAATCGGAGAACAATGGCAACCGAATCGAACGAGTCTTCAAAGTTCATAATATGCAAAAGACATTAGCTGGATTTGAAGAATACAGGGAAATGGTGAAGATCAAGGCAAGCAAGCTTTCGAAGAAACACCCTCGATGCCTTGCCGATGGTAACGAGCTGCTGAGGTTTTATGGAACTACTTTAGCCTGCTCTCTTGGACTAAATGGCTCCTCTAGCCTCTGCATATCACAGAAATGCAGTGTCTGCAGAATCATAAGGAATGGTTTCTCAACCAAGAAGGATATAAAAGAAGAAGTAGGAGTTTTCACGACTTCGACAAGCGGAAAAGCTTTCGAAACCATTAAAACGACAGAAGAAAGCTCGGTAAAGAAAGCATTGATAATCTGCAGAGTGATTGCAGGGAGGGTACATAGGCCTCTGGAAAATATACAAGATATGGTTGGCCAATCAGGGTTTGATTCTTTAGCTGGCAAAGTGGGATTACATTCCAATATTGAAGAGCTTTATTTGCTTAATCCTAGAGCTTTGCTTCCTTGTTTTGTTGTAATCTGCAAACCATGA 1338 43.57 MPTVWFSLKKSFPCKPEPSEVYDPKNRKQLNTITTKKASRKSGCSSGRSGCSRSIANLKDVIHGSKRHMEKPPICSPRSIGSSEFLNPIAHEVILSNSKCELKITGFGSFHQEDVGSAGFGGGGGGGGGGNSPFFGTLRPGTPGPGEHFVNNSNSPFNNTSMSGARKVPSLLSYRDGSAAGSTAKSKVSGEVHPSKRFSPLTELNGNTFSTVTCHKCGEQFCKLEAAESHHLSKHAVTELVEGDSSRKIVEIICRTNLLKSENNGNRIERVFKVHNMQKTLAGFEEYREMVKIKASKLSKKHPRCLADGNELLRFYGTTLACSLGLNGSSSLCISQKCSVCRIIRNGFSTKKDIKEEVGVFTTSTSGKAFETIKTTEESSVKKALIICRVIAGRVHRPLENIQDMVGQSGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKP* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20266289 20268468 - CsaV3_3G022770.1 Csa03g02277 523182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02277 445 Gene3D - 242 444 - -
Csa03g02277 445 ProSitePatterns Zinc finger C2H2 type domain signature. 214 235 IPR013087 -
Csa03g02277 445 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 445 - -
Csa03g02277 445 PANTHER - 2 445 - -
Csa03g02277 445 SUPERFAMILY ADP-ribosylation 237 444 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02277 Csa-Chr3:20266289 Csa05g01505 Csa-Chr5:17444431 1.45E-68 dispersed
Csa06g03559 Csa-Chr6:28879871 Csa03g02277 Csa-Chr3:20266289 1.31E-06 transposed
Csa03g00581 Csa-Chr3:5040183 Csa03g02277 Csa-Chr3:20266289 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02277 - - csv:101213316 840.491