Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02281 ATGACATTTCGACAACTTATGGGTGTTGCAAAAAGGAGATGTTTGGTTGTTCTGGTGATTCTCATTTGTGCTTCTTTAGCAACTTGCTTGAAGAACCACGAGGAAGAGGAACTGATTCTGAGTCAACTAGCTGACCCAATTACTGGGGATGTCAACACAGAGATGGCTGAGCTGTTACTGGTTAAGTGCAACTTGGATTTGTTTCAGTTAAGGGAAGCTGCAGATGGTATTGACCTCTGCTTCGAAGAAACACCGAGAAGCACAAATGGAATTAACTTTGAATGTCGGATGCTGACAAAAGAGAAAACAAACAGAATGCTAAGGGCGATGCATCCCCAGATGAAGCAAACTCTTTTAGACTGTTTAAGAAAAAAATTCCATGTCTCTGGAAAAGACTACAGCTCTGAAGCTTGGTACACCAGGTATTTGGAGTCATTGTTAATAATGCCCGGTAGTCTTAGAAGGAAGTTAAGTTCTAGATTTCTTCGAAGTGCTAAAGAAGGAACTGCTCCCCCACCTAAATCTTCAGCTGATGAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAAAAAGAAAAGAAATCTAATAATAATCAAACAGTCATCATCGCTGTTGTTGTAACAGCGACAGTGACTTTTATTATTGTAGCTCTGCTATTTTTATGCTATAACAAGAGTGGCTCCAGAGTGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGTTTAAGTTCCTCCCCAAAATATTCTGCTTTTGGGAATTCTCTTAAGGATGACAAGCTCATGAATCAATCGTCTAGCTTGAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAGCCTGCACATTGGCTCTGATGGTGAACGTATTTCAATGCAGGGACCTCCATCTTTTGGAGCTGCTGGAATTGCCAATAATTCATCTTTTGGATCAACGAATATGGCTGGAAGTAGTAATGGTTTGGTGCCACCTCCTCCAGGAGCATTGCCAGTCACCTCAGAAATTTTACCTCCTCTGAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAACGTCCTTCGTCTTTTAAGCCCCCATCCACCATGGCTAGTCCTCCTCCTCCACCACCTCCTGCACCACCACCACCAAGACCACCAGGAAACTCAGTTCGCCCTCCAGGACCTCCTCCTCCTCCACCACCTATACCAGGCAAGGCAGGCCCTCGCCCACCGCCACCTCCCAAAAGTGGTATTAATGCTCCTCCTCGGCCACCTCCATTAGCACACAAAGGTGCAAATCCTCCTCGACCTCCAAGGCCTTTTGGTTCAGGTGATGATGAATTGGACGAATCAGGTGTTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCCGACCATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCTTTCCAATTCAACGAGGAGATGATAGAAACTCTTTTCGGATATACGCCTGTAGATAAAACCAAAACTGAGGGCAAGAAGGAGTCATCATCACAAGATCCTGCACTACAGTACATTCAGATTATTGATTCAAAGAAATCACAAAATCTGTCCATTCTTTTGCGAGCGCTAAATGTGACAAAAGAAGAAGTTTGTGATGCGCTTCATGAAGGAACTGAACTTCCTTCCGAACTTCTTGAGAACTTGCTGAGGATGGCACCAACTCCAGAAGAAGAACTCAAGCTTAGACTGTTTAGCGGGGAACTTTCTCAACTTGGAAATGCTGAGCGTTTCCTTAAATCTTTGGTTGATATCCCATTTGCTTTCAAAAGGTTGGAATCGTTGCTTTTCATTGGCACTCTTCAGGAGGACATCGCGATCACCAAAGAGTCCTTCGTTAACTTGGAGGTTGCTTGCAAGGAACTTCGGAGCAGCAGGTTGTTCCTCAAACTTCTAGAAGCTGTTCTTAAGACGGGCAATCGAATGAACGATGGGACTTTTCGTGGTGGTGCACAAGCATTCAAATTGGACACTCTTTTAAAATTGTCGGATGTGAAAGGAAAAGATGGCAAGACTACATTATTGCACTTTGTAGTTCAGGAGATAATTCGCACAGAAGGGATAAGAGCTGCTCGGAATGGCACAGGAAGCCAGAGCTTCTCAAGCACCTCATCAAAGAATTTGCTGGATGAAACTACTAATGACACCGAAGAGCATTATCGTACCTTGGGTCTTCAGGTCGTCTCGGGGTTGAGTGGCGAACTTCAGAATGTGAAGAAAGCAGCAACGATAGATGCTGATGCCTTGACTGGAACTGTTTCGAAACTTGGGCATGCACTCTTAAAGACAAGAGACTTTGTGAATAAAGACATGCAGGGTCTAGGTGAAGAGAGTCAATTTCACGAAACACTGAAAGTCTTTGTGCAGAATGCTGAGGCTGATATCATGGCCCTCCTGGAAGAAGAAAAAAGAATCATGGAATTGGTGAAAAGCACAGGCGACTACTTCCATGGAAATGCAGGAAAAGATGAGGGCTTACGGTTGTTTGTAATTGTGAGAGATTTCTTGATAATGATAGATAAGACATGCCGAGAAATAAAGGAGGTACAGAGAAAGCAGGCGAAGGGACACAGAAAGGCAGTGTCATCTTCTGATATCCACCCGCCTTCATCTTCGTCGTCTACTAATATCAATCACCACCCGCCATCGTCTACTGATATCAATCACCAACCCCCGTCGTCTACCGACATCAATCAACCCCCGTCGTCTACCGATATCAGTCAACCCCCGTCGTCTACTGATATCAGTCAACCCCCTTCAACTACAGTTTCTGATCTACGACACCCTCCTTCTCCTGATTTGAATCAGCTGATTTTCCCTGCAATCACTGATCGTCGGATGGGTAACTCAAGTTCAGATGATGAGGAGAGTCCGTAG 2916 44.75 MTFRQLMGVAKRRCLVVLVILICASLATCLKNHEEEELILSQLADPITGDVNTEMAELLLVKCNLDLFQLREAADGIDLCFEETPRSTNGINFECRMLTKEKTNRMLRAMHPQMKQTLLDCLRKKFHVSGKDYSSEAWYTRYLESLLIMPGSLRRKLSSRFLRSAKEGTAPPPKSSADEKPSRKASSTSGQKEKKSNNNQTVIIAVVVTATVTFIIVALLFLCYNKSGSRVKQNDENHERPLLSLSLSSSPKYSAFGNSLKDDKLMNQSSSLSHHQRAPSLDGSLHIGSDGERISMQGPPSFGAAGIANNSSFGSTNMAGSSNGLVPPPPGALPVTSEILPPLKPPPGRAVPLPPERPSSFKPPSTMASPPPPPPPAPPPPRPPGNSVRPPGPPPPPPPIPGKAGPRPPPPPKSGINAPPRPPPLAHKGANPPRPPRPFGSGDDELDESGVPKAKLKPFFWDKVLANPDHSMVWHQIKAGSFQFNEEMIETLFGYTPVDKTKTEGKKESSSQDPALQYIQIIDSKKSQNLSILLRALNVTKEEVCDALHEGTELPSELLENLLRMAPTPEEELKLRLFSGELSQLGNAERFLKSLVDIPFAFKRLESLLFIGTLQEDIAITKESFVNLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAARNGTGSQSFSSTSSKNLLDETTNDTEEHYRTLGLQVVSGLSGELQNVKKAATIDADALTGTVSKLGHALLKTRDFVNKDMQGLGEESQFHETLKVFVQNAEADIMALLEEEKRIMELVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMIDKTCREIKEVQRKQAKGHRKAVSSSDIHPPSSSSSTNINHHPPSSTDINHQPPSSTDINQPPSSTDISQPPSSTDISQPPSTTVSDLRHPPSPDLNQLIFPAITDRRMGNSSSDDEESP* 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20297910 20305421 - CsaV3_3G022810.1 Csa03g02281 523186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02281 971 Coils Coil 801 821 - -
Csa03g02281 971 SUPERFAMILY Formin homology 2 domain (FH2 domain) 394 870 - -
Csa03g02281 971 ProSiteProfiles Formin homology-2 (FH2) domain profile. 446 878 IPR015425 -
Csa03g02281 971 MobiDBLite consensus disorder prediction 163 196 - -
Csa03g02281 971 SMART it6_source 446 867 IPR015425 -
Csa03g02281 971 PRINTS Proline rich extensin signature 325 346 - -
Csa03g02281 971 PRINTS Proline rich extensin signature 348 364 - -
Csa03g02281 971 PRINTS Proline rich extensin signature 371 388 - -
Csa03g02281 971 PRINTS Proline rich extensin signature 390 415 - -
Csa03g02281 971 PANTHER FORMIN-LIKE PROTEIN 3 11 135 - -
Csa03g02281 971 PANTHER FORMIN-LIKE PROTEIN 3 379 878 - -
Csa03g02281 971 PANTHER FORMIN-LIKE PROTEIN 3 165 386 - -
Csa03g02281 971 MobiDBLite consensus disorder prediction 304 323 - -
Csa03g02281 971 Gene3D Formin, FH2 domain 451 880 IPR042201 -
Csa03g02281 971 MobiDBLite consensus disorder prediction 327 439 - -
Csa03g02281 971 Pfam Formin Homology 2 Domain 452 851 IPR015425 -
Csa03g02281 971 MobiDBLite consensus disorder prediction 877 942 - -
Csa03g02281 971 MobiDBLite consensus disorder prediction 863 971 - -
Csa03g02281 971 MobiDBLite consensus disorder prediction 267 450 - -
Csa03g02281 971 PANTHER FORMIN-RELATED 165 386 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Csa03g02281 971 PANTHER FORMIN-RELATED 379 878 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Csa03g02281 971 PANTHER FORMIN-RELATED 11 135 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02708 Csa-Chr2:23598171 Csa03g02281 Csa-Chr3:20297910 0 dispersed
Csa03g02281 Csa-Chr3:20297910 Csa03g02718 Csa-Chr3:25959151 6.58E-120 dispersed
Csa03g02281 Csa-Chr3:20297910 Csa02g01413 Csa-Chr2:13503958 8.75E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02281 - - csv:101213072 1731.07