Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g02287 | ATGGTATCCCCCGAAAATCCCAATTGGTTGTTCGATTATGGTTTGATCGAAGACATCCCTGTGCCCGATGGGAATTTCCCGGTCACGAGCTCAAGCTTCTCTTGGCCTATTCAGCCCTTTAACGGCTCCCATGATTCCGGTGTAGAAATTGATGGATCGTTGGCAGATCTGGATGGCCATCTAGAATCAGGCTCGAAGAAGCGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATTTTAGTTGATGCAGTTCGAATGGTGAATCAGCTGCGTGGTGAAACGGAGAAACTAAAGGAATCGAATTCAAGTCTCCAGGAGAAAATCAAAGAGTTGAAGGCTGAGAAGAATGAACTTCGAGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTAAAGTCCATGCCTGCACAACAACCTGGCTTCTTACCTCCACCAATACCTACATTTCCTGCTCAGGGTCAAGCTCCCGGTAATAAGTTATTTCCTTTCATTGGTTACCACCCGAGTGTTGCCATGTGGCAATTCATGCCACCTGCTGCGGTGGACACGTCACAGGATCACGTACTCCGGCCACCCGTCGCCTAA | 708 | 48.87 | MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFSWPIQPFNGSHDSGVEIDGSLADLDGHLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRGETEKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFPAQGQAPGNKLFPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA* | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 20405212 | 20408271 | + | CsaV3_3G022870.1 | Csa03g02287 | 523192 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g02287 | 235 | Gene3D | - | 65 | 124 | IPR036638 | GO:0046983 | |
Csa03g02287 | 235 | Pfam | Helix-loop-helix DNA-binding domain | 79 | 126 | IPR011598 | GO:0046983 | |
Csa03g02287 | 235 | CDD | bHLH_AtILR3_like | 83 | 155 | - | - | |
Csa03g02287 | 235 | PANTHER | TRANSCRIPTION FACTOR ILR3 | 1 | 235 | - | - | |
Csa03g02287 | 235 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 126 | IPR011598 | GO:0046983 | |
Csa03g02287 | 235 | PANTHER | BHLH TRANSCRIPTION FACTOR | 1 | 235 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 | |
Csa03g02287 | 235 | Coils | Coil | 123 | 178 | - | - | |
Csa03g02287 | 235 | Gene3D | arf6 gtpase in complex with a specific effector, jip4 | 125 | 179 | - | - | |
Csa03g02287 | 235 | SMART | finulus | 81 | 132 | IPR011598 | GO:0046983 | |
Csa03g02287 | 235 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 75 | 146 | IPR036638 | GO:0046983 | |
Csa03g02287 | 235 | CDD | bZIP | 141 | 173 | - | - | |
Csa03g02287 | 235 | MobiDBLite | consensus disorder prediction | 163 | 195 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01130 | Csa-Chr1:6972358 | Csa03g02287 | Csa-Chr3:20405212 | 4.74E-76 | dispersed | |
Csa02g01354 | Csa-Chr2:13017831 | Csa03g02287 | Csa-Chr3:20405212 | 6.31E-21 | dispersed | |
Csa02g02706 | Csa-Chr2:23586273 | Csa03g02287 | Csa-Chr3:20405212 | 3.44E-82 | dispersed | |
Csa03g01221 | Csa-Chr3:9421374 | Csa03g02287 | Csa-Chr3:20405212 | 1.90E-51 | dispersed | |
Csa03g02287 | Csa-Chr3:20405212 | Csa06g03326 | Csa-Chr6:27815147 | 2.46E-24 | dispersed | |
Csa03g02287 | Csa-Chr3:20405212 | Csa03g02292 | Csa-Chr3:20455891 | 6.25E-74 | proximal | |
Csa03g02287 | Csa-Chr3:20405212 | Csa03g02293 | Csa-Chr3:20456474 | 3.18E-58 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31268 | PF00010 | HLH | 9.90E-10 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g02287 | - | - | csv:101215402 | 454.521 |