Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02287 ATGGTATCCCCCGAAAATCCCAATTGGTTGTTCGATTATGGTTTGATCGAAGACATCCCTGTGCCCGATGGGAATTTCCCGGTCACGAGCTCAAGCTTCTCTTGGCCTATTCAGCCCTTTAACGGCTCCCATGATTCCGGTGTAGAAATTGATGGATCGTTGGCAGATCTGGATGGCCATCTAGAATCAGGCTCGAAGAAGCGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATTTTAGTTGATGCAGTTCGAATGGTGAATCAGCTGCGTGGTGAAACGGAGAAACTAAAGGAATCGAATTCAAGTCTCCAGGAGAAAATCAAAGAGTTGAAGGCTGAGAAGAATGAACTTCGAGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTAAAGTCCATGCCTGCACAACAACCTGGCTTCTTACCTCCACCAATACCTACATTTCCTGCTCAGGGTCAAGCTCCCGGTAATAAGTTATTTCCTTTCATTGGTTACCACCCGAGTGTTGCCATGTGGCAATTCATGCCACCTGCTGCGGTGGACACGTCACAGGATCACGTACTCCGGCCACCCGTCGCCTAA 708 48.87 MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFSWPIQPFNGSHDSGVEIDGSLADLDGHLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRGETEKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFPAQGQAPGNKLFPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA* 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20405212 20408271 + CsaV3_3G022870.1 Csa03g02287 523192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02287 235 Gene3D - 65 124 IPR036638 GO:0046983
Csa03g02287 235 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Csa03g02287 235 CDD bHLH_AtILR3_like 83 155 - -
Csa03g02287 235 PANTHER TRANSCRIPTION FACTOR ILR3 1 235 - -
Csa03g02287 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Csa03g02287 235 PANTHER BHLH TRANSCRIPTION FACTOR 1 235 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Csa03g02287 235 Coils Coil 123 178 - -
Csa03g02287 235 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Csa03g02287 235 SMART finulus 81 132 IPR011598 GO:0046983
Csa03g02287 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983
Csa03g02287 235 CDD bZIP 141 173 - -
Csa03g02287 235 MobiDBLite consensus disorder prediction 163 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01130 Csa-Chr1:6972358 Csa03g02287 Csa-Chr3:20405212 4.74E-76 dispersed
Csa02g01354 Csa-Chr2:13017831 Csa03g02287 Csa-Chr3:20405212 6.31E-21 dispersed
Csa02g02706 Csa-Chr2:23586273 Csa03g02287 Csa-Chr3:20405212 3.44E-82 dispersed
Csa03g01221 Csa-Chr3:9421374 Csa03g02287 Csa-Chr3:20405212 1.90E-51 dispersed
Csa03g02287 Csa-Chr3:20405212 Csa06g03326 Csa-Chr6:27815147 2.46E-24 dispersed
Csa03g02287 Csa-Chr3:20405212 Csa03g02292 Csa-Chr3:20455891 6.25E-74 proximal
Csa03g02287 Csa-Chr3:20405212 Csa03g02293 Csa-Chr3:20456474 3.18E-58 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31268 PF00010 HLH 9.90E-10 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02287 - - csv:101215402 454.521