Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02318 ATGCTTCTGCCCAGGCTTGGGCGTTCAGAGCTCAGGCAACGTTGTTTGAACGCCGGCACCACGGAGCTGGAGGGTTGGAAGATGTACATTGGGTTTCAACATAGAGAGATTTTAGTGTCGGCGAGTGGGGCGGTGTTGGTGGACGGTTCGGATTTTCCGGCGGATGTGGGGAAAGGGGTGATCTTGGCTGGGTACACACAAACGGACTTGAAAACGGCGATAGAAACTGCCGGAGATTATAACCAAATGCAGATGACGATTGATATCACCGGAACACAATTCGGTGTGAAGAAGAATGGAATTCCGATGCCGAAAACAATTGGCCTTGAAAACGAAGGCTTTAAGTGTCCGCAGCCACGCCGTCATCGCAGCAAAAGCTATATGCACATTTGCTGCAAGAAAGACCCCAAATTCAAGGAAAAACCACCAAAGAAGACGAAGTTTTTGCCGAGACAAAACGGCGATCTCTCCCTCACCTATGATGTTCTCCAAGCTTACGGCAACAACTATCTCGCACAAGTCTCCATCGACAACAACAACCCTCTCGGCCGCCTCGACCATTGGAACTTAACTTGGGAATGGATGAGAGGAGAATTCATTTCCACCATGAGAGGAGCTTATACTCACAGAACTGATTCCTCAGACTGCATCTTTGGCCCTCAAGGCCAATACTATCAAGATTTTGACTTCTCCCAAGTCATGAATTGTGAGAAAAATCCCATCATTGCGGACCTTCCTTCCGATCGAGCCAACGATTCCAAGGTTGGGAAGTTACCCTTCTGCTGCAAGAACGGCACGATCTTACCGTCATTGATGGATCAAAGCAAAGCAAGGTCTATTTTTCAGCTCCAAGTCTATAAACTTCCTCCTGACTTCAATAGAACTGCCTTGTACCCTCCTCAGAAATGGAAGATCAATGGCATTCTTAACCCCAATTACAAATGTGGAGCTCCCATTAGAGTTGAACCAACAGAATTTCCTGACTCGACTGGACTTCAAGCCATAACCACAGCCATTGCTAGTTGGCAAGTGGTTTGCAACATTACAGCTCCAAAACCTAAACAATCTAGATGCTGTGTTTCTTTCTCTGCTTATTATAATGACTCTGTTATCCCTTGCAATACTTGTGCTTGTGGATGTGATGAACCTCAAACTTGCAACCCAAATTCTTCCCCATTGCTTCTTCCACCAGAAGCCCTTTTAGTTCCATTTGACAATAGAACTATAAAGGCAAAAGCTTGGGCCAAAATCAAACACTTACCAATCCCAAAGAAGCTCCCTTGTCCTGATAATTGTGGAGTTAGTTTAAATTGGCATATAAACTCAGATTATAGCAGTGGTTGGACTGCTAGAATCACTCTTTTCAATTGGGAAGAATACCCTTTTGAGGATTGGTTTGCTGCTGTTCAATTGGATAAAGCTGCTAAAGGGTATGAGAATGTGTACTCTTTCAATGGGACTAAACTCCCACTAGATATGATCAAGAACACCATCTTCTTTCAAGGATTGGAAGGTTTGAATTACCTGATGGGGGAGACGAATGGGACGGACCCGAAATTCGATCCGCGAGTACCGGGAAAGCAACAATCGGTGATCTCGTTCACTAAGAAGAATATGAGGAACCTTAATATAAGGGAAGGAGATGGATTCCCTTCAAAGGTTTATTTCAATGGAGAAGAGTGTGCAATTCCTCCTCATATTCCATTAGGAAATGATGCTGCACATAGCCTTCAAGTCAGCTCTGGACCTTTAACGCTGCTACTTACAGCTGTGGCCTTTTTCATAGCCATTAACTAA 1797 44.69 MLLPRLGRSELRQRCLNAGTTELEGWKMYIGFQHREILVSASGAVLVDGSDFPADVGKGVILAGYTQTDLKTAIETAGDYNQMQMTIDITGTQFGVKKNGIPMPKTIGLENEGFKCPQPRRHRSKSYMHICCKKDPKFKEKPPKKTKFLPRQNGDLSLTYDVLQAYGNNYLAQVSIDNNNPLGRLDHWNLTWEWMRGEFISTMRGAYTHRTDSSDCIFGPQGQYYQDFDFSQVMNCEKNPIIADLPSDRANDSKVGKLPFCCKNGTILPSLMDQSKARSIFQLQVYKLPPDFNRTALYPPQKWKINGILNPNYKCGAPIRVEPTEFPDSTGLQAITTAIASWQVVCNITAPKPKQSRCCVSFSAYYNDSVIPCNTCACGCDEPQTCNPNSSPLLLPPEALLVPFDNRTIKAKAWAKIKHLPIPKKLPCPDNCGVSLNWHINSDYSSGWTARITLFNWEEYPFEDWFAAVQLDKAAKGYENVYSFNGTKLPLDMIKNTIFFQGLEGLNYLMGETNGTDPKFDPRVPGKQQSVISFTKKNMRNLNIREGDGFPSKVYFNGEECAIPPHIPLGNDAAHSLQVSSGPLTLLLTAVAFFIAIN* 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20725839 20729123 - CsaV3_3G023180.1 Csa03g02318 523223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02318 598 PANTHER COBRA-LIKE PROTEIN 7 15 594 - -
Csa03g02318 598 Pfam COBRA-like protein 170 349 IPR006918 GO:0010215|GO:0031225
Csa03g02318 598 PANTHER COBRA-LIKE PROTEIN 10 15 594 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00533 Csa-Chr3:4452146 Csa03g02318 Csa-Chr3:20725839 0 dispersed
Csa03g01498 Csa-Chr3:11114152 Csa03g02318 Csa-Chr3:20725839 0 dispersed
Csa03g02318 Csa-Chr3:20725839 Csa04g01017 Csa-Chr4:7962730 2.54E-37 dispersed
Csa03g02318 Csa-Chr3:20725839 Csa01g00340 Csa-Chr1:2128397 5.06E-38 transposed
Csa03g02318 Csa-Chr3:20725839 Csa01g00618 Csa-Chr1:3946497 5.99E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02318 - - csv:101216608 902.894