Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02348 ATGTCTTGGCAATCTTACATTGACGATCAGTTGATGTATGAGGTTGATGGCCAACATCTCAAAGCCGCTGCTATAATCGGTAACGACGGTTCTGTTTGGGCTCAGAGTTCCGCTTTCCCTCAGTACAAGCCAGAAGAGATTTCTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCCCCAACTGGGTTACACCTTGGTGGATCAAAGTACATGGTTATTCAGGGAGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGGATCACTGTAAAGAAAACAACCCAAGCACTGATTTTTGGTTTATATGATGAACCTATGACTCCAGGACAGTGCAACGTGATTGTTGAGAAGTTGGGAGATTACCTGATTGATCAAGGCCTCTAA 396 44.7 MSWQSYIDDQLMYEVDGQHLKAAAIIGNDGSVWAQSSAFPQYKPEEISAIMKDFDEPGSLAPTGLHLGGSKYMVIQGESGAVIRGKKGTSGITVKKTTQALIFGLYDEPMTPGQCNVIVEKLGDYLIDQGL* 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21171396 21173759 + CsaV3_3G023480.1 Csa03g02348 523253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02348 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Csa03g02348 131 PANTHER PROFILIN 1 131 - -
Csa03g02348 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Csa03g02348 131 CDD PROF 2 130 IPR005455 GO:0003779
Csa03g02348 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Csa03g02348 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Csa03g02348 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Csa03g02348 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Csa03g02348 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Csa03g02348 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Csa03g02348 131 SMART prof_2 1 131 IPR005455 GO:0003779
Csa03g02348 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Csa03g02348 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Csa03g02348 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Csa03g02348 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Csa03g02348 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Csa03g02348 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Csa03g02348 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Csa03g02348 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Csa03g02348 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Csa03g02348 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00079 Csa-Chr2:570550 Csa03g02348 Csa-Chr3:21171396 6.97E-76 dispersed
Csa02g00080 Csa-Chr2:573861 Csa03g02348 Csa-Chr3:21171396 2.36E-69 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02348 K05759 - csv:101218089 268.085