Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02358 ATGTTTTGGTCAATGAATCCTGTACGAATTTCTACTTTTTTTTTCCTTCTATACTTTGCTGTTCTTCTTCAAGATCATTCCCTCTGTTCTTCTTACCCCATGCCCTTGAATTGTACGGACACAACTCGTTTATGCACTTCGTTTTTGGCCTTTAAGGCTCAGCCAAATCAGACCCTTTCTGTGATCCAGAGTATGTTCGACGTATTGCCTGAAGATGTAACCGTTGAAGGGAATGGTCAGGACTATGTGTTCATCAGGAAGAACTGCTCCTGTGCCTCTGGGTTGAAGAAATACATAACCAACACCACTTTTACTATCAAATCCAATCGCGGTCGTGTATATGACATAGTCATGGAAGCGTATGATGGGCTTGCGTTGTTACCCAACACAACTCGAATGGCGAGGAACGGCGCTGTTGTGTCTTTGAGATTGTTTTGTGCTTGTTCGAGCGGGTTGTGGAACTATTTGTTGAGCTATGTGATGAGAGATGGTGATACCATAGAGTCTTTGGCTAGTCGATTTGGGGTTAGTATGGATAGCATTGAGTCGGTGAATGGAATTGAAAATCCGGGTAATGTTACTGCGGGCGCTTTGTATTACATTCCCTTGAATTCGGTTCCTGGAGATCCTTATCCGTTGGAGACGAACATTTTTCCTGCTCCTACTCCAGCTCCTTCCTATACTCCGAACAATTTCTCAGATAATGCTGAGAGCCCCAAACGTCATCCTCCATATATATGGATCGTTGGAAGTTTGGGAATTATTCTTGTTCTGATTTTGGTAGGCATAGTAGGTTATGCTTGCTTCAGGTGGTTGAAATGCTTTTCTAGATCAAGGAGTAGCCACTCCAAAGATCCCATTGGAAAGGTTTCCCACAAGTTCCATATTCTTGGGAAGTCAAGTTTCTGCTGTGCTTCAGGAAGGTATATTTGCTGCAGTTCTGCAGATTGGAAGCAAGCCAGCAGGGAATCCAGTGACAACCAGAGTGCAATTCCAAAAGCTATTGAGAACAATGTATTTGATGTGGACAAACCTGTAGTTTTTTCATGCGAAGAAATTGTTTCCTCAACCGATAGTTTCTCTGATTCAAGTCTACTTGGCCATGGAACTTATGGTTCAGTGTACTATGGCATCCTGCGTGATCAGGAAGTTGCTATAAAAAGAATGACTGCAACAAAAACTAAAGAGTTTATGGCAGAGATGAAAGTCCTCTGCAAGGTTCATCATGCTAACCTGGTAGAATTGATTGGTTATGCAGCCAGTGAGGATGAGTTGTTTCTTATTTATGAATATGCTCAAAAAGGTCCCCTCAAAAGCCATTTACATGATCCTCTGAACAAGGGTCATACGCCACTATCTTGGATTATGAGACTCCAAATTGCTTTGGATGCTGCGAGAGGTCTCGAGTACATTCATGAGCATACTAAAACTCATTACGTCCATAGAGATATTAAGACAAGCAACATCTTACTAGATGGTTCTTTTAGAGCAAAGATTTCTGACTTTGGGTTGGCCAAGCTTGTTGGAAAAACAAATGAGGGTGAAGCTACAGTAACCAAAGTTGTTGGTACATACGGTTATTTGGCTCCCGAATATTTGAGTAATGGTCTTGCCACAACCAAAAGTGATGTGTATGCTTATGGTGTCGTTCTTTTTGAGCTTATAACTGGAAAGGAGGCAATTATACGAACTGAGGGGACAACTATGAAGAATCCTGAAAGACGGTCACTAGCATCTATTATGTTAGCTGTTCTTCGGAATGCACCTGATCCCATGAATATGGCAAGTCTTAAAGATCAAGTTGATCCAAGTATGATGGATTTGTATCCTCATGACTGTCTATTTAAGGTGGCCATGTTGGCAAAGCAGTGTGTAGATGAAGATTCAATCCTACGTCCCGACATGAAGCAAGTTGTGATATCCTTGTCACAAATCCTACTCTCTTCGATCGAGTGGGAAGCCACTCTAGCTGGTAACAGCCAAGTTTTTAGTGGTCTTGTCCAAGGAAGATAG 2013 42.03 MFWSMNPVRISTFFFLLYFAVLLQDHSLCSSYPMPLNCTDTTRLCTSFLAFKAQPNQTLSVIQSMFDVLPEDVTVEGNGQDYVFIRKNCSCASGLKKYITNTTFTIKSNRGRVYDIVMEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLLSYVMRDGDTIESLASRFGVSMDSIESVNGIENPGNVTAGALYYIPLNSVPGDPYPLETNIFPAPTPAPSYTPNNFSDNAESPKRHPPYIWIVGSLGIILVLILVGIVGYACFRWLKCFSRSRSSHSKDPIGKVSHKFHILGKSSFCCASGRYICCSSADWKQASRESSDNQSAIPKAIENNVFDVDKPVVFSCEEIVSSTDSFSDSSLLGHGTYGSVYYGILRDQEVAIKRMTATKTKEFMAEMKVLCKVHHANLVELIGYAASEDELFLIYEYAQKGPLKSHLHDPLNKGHTPLSWIMRLQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAYGVVLFELITGKEAIIRTEGTTMKNPERRSLASIMLAVLRNAPDPMNMASLKDQVDPSMMDLYPHDCLFKVAMLAKQCVDEDSILRPDMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR* 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21317706 21322171 + CsaV3_3G023580.1 Csa03g02358 523263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02358 670 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524
Csa03g02358 670 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 36 670 IPR044812 GO:0019199|GO:0045087
Csa03g02358 670 Gene3D LysM domain 154 207 IPR036779 -
Csa03g02358 670 Gene3D Phosphorylase Kinase; domain 1 332 431 - -
Csa03g02358 670 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02358 670 SUPERFAMILY LysM domain 158 202 IPR036779 -
Csa03g02358 670 SMART LysM_2 158 202 IPR018392 -
Csa03g02358 670 CDD LysM 158 201 IPR018392 -
Csa03g02358 670 Pfam Protein tyrosine and serine/threonine kinase 364 640 IPR001245 GO:0004672|GO:0006468
Csa03g02358 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Csa03g02358 670 PANTHER BNAA06G02020D PROTEIN 36 670 - -
Csa03g02358 670 Gene3D Transferase(Phosphotransferase) domain 1 433 656 - -
Csa03g02358 670 Pfam LysM domain 159 196 IPR018392 -
Csa03g02358 670 ProSiteProfiles LysM domain profile. 157 201 IPR018392 -
Csa03g02358 670 SMART serkin_6 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g02358 670 SUPERFAMILY Protein kinase-like (PK-like) 342 642 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02358 Csa-Chr3:21317706 Csa07g00338 Csa-Chr7:2518563 7.23E-93 dispersed
Csa05g02307 Csa-Chr5:25567490 Csa03g02358 Csa-Chr3:21317706 6.10E-28 dispersed
Csa06g01213 Csa-Chr6:10269676 Csa03g02358 Csa-Chr3:21317706 6.03E-35 dispersed
Csa03g02358 Csa-Chr3:21317706 Csa03g03235 Csa-Chr3:29698154 5.34E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78007 PF07714 PK_Tyr_Ser-Thr 2.20E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02358 - - csv:101213624 1313.9