Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02368 ATGGCGGAATCAAACAACTGGAATTCAGAATCTGAAAGTAGAGAAATGAAAAGGGGAAAACAGAGGAATCAAGAACAGAGAGATCAGAAACATCCAATTTACAGAGGCGTACGAAGAAGGAGTTGGGGTAAATGGGTGTCGGAGATCCGGCAACCGAGGAAGAAATCTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCGGCACGTGCACACGACGTGGCGGCGCTCAGTATCAAAGGGGATTCCGCCAAGGCCATTCTCAATTTCCCTCAGCTCGCCGGTTTGCTTCCCCGACCGGTGTCGTTAATGCCGAGGGATATTCAAGAGGCGGCTGCCAAGGCGGCGGCGATGGTGGATTTTGATTCCGAGACGGTGTCGTTTTCGAATGGTGAAGAAGGGTCAGATGAATTGGCGGAAATTGTGGAATTGCCCAATATTGAAGAGGATATAAGAGCTGAGTCGTGGAACGAGTTCGAGTTTATTGACTCCGTTGATTGGTGGGGAAATCCGCCGTTCACGGCAGCGGAAATGGATTTCTGTGCGGTGTTTTCAGATCAGAGTACGGCTCCGGTCACCTTCGACCGCGGGGATTGGGAATGA 606 51.49 MAESNNWNSESESREMKRGKQRNQEQRDQKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMVDFDSETVSFSNGEEGSDELAEIVELPNIEEDIRAESWNEFEFIDSVDWWGNPPFTAAEMDFCAVFSDQSTAPVTFDRGDWE* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21466638 21467582 + CsaV3_3G023680.1 Csa03g02368 523273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02368 201 SMART rav1_2 33 98 IPR001471 GO:0003700|GO:0006355
Csa03g02368 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 179 - -
Csa03g02368 201 MobiDBLite consensus disorder prediction 10 32 - -
Csa03g02368 201 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 179 - -
Csa03g02368 201 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Csa03g02368 201 ProSiteProfiles AP2/ERF domain profile. 33 92 IPR001471 GO:0003700|GO:0006355
Csa03g02368 201 SUPERFAMILY DNA-binding domain 33 93 IPR016177 GO:0003677
Csa03g02368 201 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Csa03g02368 201 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Csa03g02368 201 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Csa03g02368 201 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Csa03g02368 201 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02269 Csa-Chr2:20317603 Csa03g02368 Csa-Chr3:21466638 6.86E-40 dispersed
Csa03g02368 Csa-Chr3:21466638 Csa03g04550 Csa-Chr3:39659241 1.10E-42 dispersed
Csa03g02368 Csa-Chr3:21466638 Csa02g00103 Csa-Chr2:717915 1.30E-42 transposed
Csa03g02368 Csa-Chr3:21466638 Csa07g02268 Csa-Chr7:21132427 1.96E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31272 PF00847 AP2 9.30E-14 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02368 K09286 - csv:101222354 400.208