Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02389 ATGGGTGCCGACATGTCCAACAACAACAATACCAATAATCCTCTTGCTTTCACCAAAGACTTCTTCTCTTCTCCGGCTCTTTCTCTTACCCTTGCGGGGATATTTCGACGGAGTGATCATGAGGTGGGGGATGTGGAGATGGAGGAAGTGGATGACGGGAGCGTGGGTGGAGCCAGGAGAGATAATCATGATACCATGACAGCGGAAGTTAGTAGTGAGAATTCGGGACCGGTGGTGAGGTCTAGATCGGAGGAGGAAGAGGAGGAGGAGGAGGAGGGAGGAGGGCAGGATGATCAGGAGAATGAATTAGTAGATCATGGGTGTCAGTTAAAGAGAAGGAAGAAATATCATCGCCATACCACCGAGCAGATCAGAGAAATGGAGGCGTTGTTTAAAGAGTCGCCACATCCAGATGAGAAACAAAGGCAGCAACTCAGCAAGAGATTAGGACTTTCACCAAGGCAGGTCAAGTTTTGGTTTCAAAATCGTCGAACCCAAATCAAAGCTATTCAAGAGAGGCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAAATAAAGCCATGAGAGAAATTTCCAAGAAAAAAATTGGTTGTCCCAATTGTGGAACTGCCGACGCTACTCAAGACGACCTCGTTTTCACAACCACCGAGCAATTACGTATTAAGAATGCCAAACTCAAAGCCGAGGTCGAGAAACTACGAGCAGCACTGGGAAAATATCCACAAGCGGCAGCGTCTCCATCGACATACTCGTCTGGGAACGAACAAGAGACGTCGAACAGAATCTGCTTAGATTTTTACACGGGAATATTTGGACTTGAAAATTCAAGAATCATGGAGAAAGTTGATGAAGCAGTTGAAGAGCTGAAAACAATGGCTGCAGCCGGCGACCCACTTTGGGTCCGGAGCGTGGAGACGGGAAGAGAGATTTTAAACTACGATGAGTATTTGAAAACCTTTCAGTTCAGCAATAATAATTCAAACACTCGTAATTGCCTCAAAACACACATTGAGGCCTCGAGAGAAACGGCTCTTGTTTTCATGGAGCCATCTAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAAATGTTTCCTTTTATGATATCAAAGGCAGCTACAGTTGATGTTATTTGTAATGGAGAAGCTGCCAAATGGAATAATGGTGCAGTGCAATTGATGTTTGCAGAAGTGCAAATGCTTACACCATTAGTCCCCACAAGAGAAATGTATTTCATTCGCCATTGCAAGCAGCTCGACGCAGAACAGTGGGCAATCGTTGATGTTTCAATCGAAAACGTTGAAGATAACAATATCGATGTATCGTTAGTGAAATATAGAAAACGTCCCTCTGGTTGCATCATTAAGGACGAATCTAATGGTCATTGCAAGGTAACAATGGTGGAACATTTGGAATGTGTAAAAAACAAAGTTCACAACTTGTATAGAAGCATAGTGAACAATGGCACAGCCTTCGGGGCAAGACATTGGATGGCGACTCTTCAACTCCAATGTGAACGTTCTGCTTTCTTCATGGCAACAAACATCCCCATGAAAGACTCAACTGGAGTGTCAACACTAGCTGGAAGAAAAAGCACGTTAAAGTTGGCACAGAGAATGAGTTGTAGCTTCTCCCAAGCAGTTGCAGCTTCAAGTTATCAAACATGGACCAAAGTTGTGGGGAAATCAGGGGAAGACATTAGGGTTTGTTCCAGGAAGAATCTTAGTGACCCTGGCGAACCGATTGGAGTAATTTTGTGTGCCGTTTCTTCTCTTTGGTTGCCTCTTTCTCCTCATCTTCTCTTTGATTTCTTTCGAGATGAATCTCGTCGAAGTCAATGGGACGCTATGTTTGGTGGAGATAAAGCTAAGACCATTGCAAATTTGGCTAAAGGACAGGATCGAGGCAACTCAGTTACTATTCAAACAATAGGATCAAAAGAGAACAATAACAACAACATGTGGATCCTACAAGACAGCTCCACAAACTCATCGGAATCCATGGTGGTTTACTCCGGAGTAGACGTTACCAGCATGCAGTCAGTTATGTCAGGTTGTGATTCCGGCAGCGTCACCATTCTCCCTTCAGGTTTTTCAATTCTCCCTGACGGCGCCGATTCCCGACCACCCCTCCTCATCACTCGTCGTAAAGACGACAAAACTTGCGACACACACGGTGGGGCTCTACTGACCGCCGCCGTCCAAATCCTAACCGACACATCTCCCGCTGCAAAACCCACATTGGAATCGGTTGAGTTTTATGAATTTGTTTGA 2295 44.66 MGADMSNNNNTNNPLAFTKDFFSSPALSLTLAGIFRRSDHEVGDVEMEEVDDGSVGGARRDNHDTMTAEVSSENSGPVVRSRSEEEEEEEEEGGGQDDQENELVDHGCQLKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREENKAMREISKKKIGCPNCGTADATQDDLVFTTTEQLRIKNAKLKAEVEKLRAALGKYPQAAASPSTYSSGNEQETSNRICLDFYTGIFGLENSRIMEKVDEAVEELKTMAAAGDPLWVRSVETGREILNYDEYLKTFQFSNNNSNTRNCLKTHIEASRETALVFMEPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEAAKWNNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENVEDNNIDVSLVKYRKRPSGCIIKDESNGHCKVTMVEHLECVKNKVHNLYRSIVNNGTAFGARHWMATLQLQCERSAFFMATNIPMKDSTGVSTLAGRKSTLKLAQRMSCSFSQAVAASSYQTWTKVVGKSGEDIRVCSRKNLSDPGEPIGVILCAVSSLWLPLSPHLLFDFFRDESRRSQWDAMFGGDKAKTIANLAKGQDRGNSVTIQTIGSKENNNNNMWILQDSSTNSSESMVVYSGVDVTSMQSVMSGCDSGSVTILPSGFSILPDGADSRPPLLITRRKDDKTCDTHGGALLTAAVQILTDTSPAAKPTLESVEFYEFV* 765
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 21927557 21937550 + CsaV3_3G024970.1 Csa03g02389 523294
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02389 764 MobiDBLite consensus disorder prediction 37 103 - -
Csa03g02389 764 Pfam START domain 288 514 IPR002913 GO:0008289
Csa03g02389 764 Gene3D - 287 515 IPR023393 -
Csa03g02389 764 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 20 759 IPR042160 -
Csa03g02389 764 SUPERFAMILY Homeodomain-like 103 171 IPR009057 -
Csa03g02389 764 ProSiteProfiles START domain profile. 276 517 IPR002913 GO:0008289
Csa03g02389 764 Gene3D - 100 184 - -
Csa03g02389 764 CDD START_ArGLABRA2_like 281 513 - -
Csa03g02389 764 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 20 759 - -
Csa03g02389 764 Pfam Homeodomain 113 168 IPR001356 GO:0003677
Csa03g02389 764 MobiDBLite consensus disorder prediction 84 98 - -
Csa03g02389 764 MobiDBLite consensus disorder prediction 52 67 - -
Csa03g02389 764 SUPERFAMILY Bet v1-like 279 514 - -
Csa03g02389 764 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981|GO:0006355
Csa03g02389 764 CDD homeodomain 113 168 IPR001356 GO:0003677
Csa03g02389 764 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677
Csa03g02389 764 Coils Coil 221 241 - -
Csa03g02389 764 SUPERFAMILY Bet v1-like 558 713 - -
Csa03g02389 764 SMART HOX_1 112 174 IPR001356 GO:0003677
Csa03g02389 764 Coils Coil 169 199 - -
Csa03g02389 764 SMART START_1 284 514 IPR002913 GO:0008289
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02389 Csa-Chr3:21927557 Csa06g00579 Csa-Chr6:4976972 0 dispersed
Csa03g02389 Csa-Chr3:21927557 Csa07g02448 Csa-Chr7:22354861 2.23E-23 wgd
Csa03g02389 Csa-Chr3:21927557 Csa07g02252 Csa-Chr7:21047615 2.84E-170 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31274 PF01852 START 8.70E-54 CL0209 Csa TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02389 K09338 - csv:101221341 1473.76