Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02399 ATGGATTTCTGGCCGGAATTTCTCGCCAGCAGTTGGGGCAAAGAGTTCGTCGCCGGTGGAATCGGCGGTGTCGCTGGCATCGTCTCCGGTTACCCACTCGACACTCTTCGTATCCGCCAACAGCACTCCACCTCCGGCTCCGCCATCACCCTCCTCCGTAACATCATGTCCAACGGTGGCCCCGCCGCTCTCTACAGAGGAATGGGAGCTCCTCTCGCTTCTGTCACTTTCCAGAACGCCATTGTTTTTCAAACCAACGCCGTACTCTGCAGAGCCTTCGATCCATCGGCCACGGACAACCGTCCACCGTCGTACAAGGCGGTAGCATTAGGCGGATTCGGCACCGGAGCACTACAGAGCTTAATTTTAACACCGGTTGAGCTGGTGAAAATCCGTCTTCAATTACAGGATTTGGGTTCATCAAATAACATAGATCTGAATTCATCTCGACGCGGGCCGATGCAGGTTGCGAAGAACATTTTCAAAACCGAAGGCTACAAAGGTCTATACAGAGGGTTAACAATCACAATGCTAAGAGACGCTCCATCCCATTGTTTTTACTTTTGGACATACGAATTCATGAGAGAAAAGCTTCACCCCGGTTGCCGGAAAACAGGGCAAGAGACATTGAGGACGATGTTAGTTGCCGGAGGACTGGCCGGCGTTGCGAGTTGGGTTTGTTGTTACCCATTAGATGTGGTCAAAACTAGACTTCAAGCTCAATCGAAATTCAAGTTTCAAAAGTACAGTGGGATTGTAGATTGTTTCTATAAGAGTGTGAAAGAAGAAGGGTATCGTGTTTTATGGCGTGGATTAGGAACCGCAGTAGCTAGAGCTTTTGTGGTGAATGGAGCTATTTTTTCAGCTTATGAACTTAGTTTGAGGTGTTTGAACAACAATGGAGGATTTCATGCTGAAAATACCATTTGA 930 48.39 MDFWPEFLASSWGKEFVAGGIGGVAGIVSGYPLDTLRIRQQHSTSGSAITLLRNIMSNGGPAALYRGMGAPLASVTFQNAIVFQTNAVLCRAFDPSATDNRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQDLGSSNNIDLNSSRRGPMQVAKNIFKTEGYKGLYRGLTITMLRDAPSHCFYFWTYEFMREKLHPGCRKTGQETLRTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSKFKFQKYSGIVDCFYKSVKEEGYRVLWRGLGTAVARAFVVNGAIFSAYELSLRCLNNNGGFHAENTI* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21994409 21995471 - CsaV3_3G025070.1 Csa03g02399 523304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02399 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 296 IPR018108 -
Csa03g02399 309 SUPERFAMILY Mitochondrial carrier 11 291 IPR023395 -
Csa03g02399 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 197 IPR018108 -
Csa03g02399 309 Gene3D Mitochondrial carrier domain 9 304 IPR023395 -
Csa03g02399 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Csa03g02399 309 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Csa03g02399 309 PRINTS Mitochondrial carrier protein signature 170 188 IPR002067 GO:0055085
Csa03g02399 309 PRINTS Mitochondrial carrier protein signature 217 239 IPR002067 GO:0055085
Csa03g02399 309 Pfam Mitochondrial carrier protein 109 198 IPR018108 -
Csa03g02399 309 Pfam Mitochondrial carrier protein 11 92 IPR018108 -
Csa03g02399 309 Pfam Mitochondrial carrier protein 212 300 IPR018108 -
Csa03g02399 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 298 - -
Csa03g02399 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Csa03g02399 309 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 298 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g02399 Csa07g02237 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02399 Csa-Chr3:21994409 Csa03g04615 Csa-Chr3:40099548 3.00E-55 dispersed
Csa03g03051 Csa-Chr3:28799655 Csa03g02399 Csa-Chr3:21994409 5.54E-14 transposed
Csa03g02399 Csa-Chr3:21994409 Csa07g02237 Csa-Chr7:20987025 3.62E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02399 K15109 - csv:101222749 623.624