Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g02434 | ATGTGTTCCCCACAACCATGTGAACTAGGGGATTCGAGCACGAAAAGGAAATTAAGTAATTGTGGGGGCGGGGTTCTTTTTTTTTTGTTCACTATTAATAATGTGAAGATAATAGGGTTGGTCTTGGGATTAGGGCTCTCGGAATTAGCTGACGATCAAAGGACGACATTAAAGAAGAAACCTGCACCTTGCTCCTCCAGTTCACTTGATTTTGAGCCTTGTGTTTTGACTTTGGGATTTTCCGGTGGTGGTGGCGACACTCATCGGAAAGTTATTGATCATGTGGGTCCTCATCATTTGTATCGCCAAGCATCCCCTCATAGCAGCGCTGTTTGTTCTTCGTTCTCGGGTAAGGTTAAAAGAGAGAGAGATCTGAGCAGTGAAGAAGTTGAATTGGAGAGAGCTTGTTGGAGAGTTAGTGATGAAGATGACGATGTTTGTAATAATACTAGAAAGAAGCTTAGACTCTCTAAACAACAATCCGCTCTCTTGGAAGAAAGTTTCAAACAGAATAGCACGCTCAATCCTAAGCAAAAACAAGGGTTAGCAAGACAGCTAAATCTACTGCCACGACAAGTTGAAGTATGGTTTCAGAATAGGAGAGCTCGAACAAAAGTGAAGCAAACAGAAGTAGATTGTGAGTTGTTGAAGAAGTGTTGTGAGACGTTGACGGATGAAAATAGAAGATTACAAAAGGAGGTTCAAGAATTGAAGGCAATAAAGCTGGCAAAACCGGTATACATGCAGATGTCAGGGGCGACATTAACCATATGCCCCTCATGCGAAAGGGTGGGTACTGGCGGCCATGGTGGTGTCGCGGACGGTAATTCTAATCCCAAACCCAAATTTTCAATGCCTCCTAACCCTTTCTTTTACAATCCCTTCTCCAATCCTTCAGCCGCTTGTTAG | 909 | 43.23 | MCSPQPCELGDSSTKRKLSNCGGGVLFFLFTINNVKIIGLVLGLGLSELADDQRTTLKKKPAPCSSSSLDFEPCVLTLGFSGGGGDTHRKVIDHVGPHHLYRQASPHSSAVCSSFSGKVKRERDLSSEEVELERACWRVSDEDDDVCNNTRKKLRLSKQQSALLEESFKQNSTLNPKQKQGLARQLNLLPRQVEVWFQNRRARTKVKQTEVDCELLKKCCETLTDENRRLQKEVQELKAIKLAKPVYMQMSGATLTICPSCERVGTGGHGGVADGNSNPKPKFSMPPNPFFYNPFSNPSAAC* | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 22508106 | 22510600 | - | CsaV3_3G026410.1 | Csa03g02434 | 523339 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g02434 | 302 | SMART | HOX_1 | 149 | 211 | IPR001356 | GO:0003677 | |
Csa03g02434 | 302 | SMART | halz | 207 | 250 | IPR003106 | GO:0006355|GO:0043565 | |
Csa03g02434 | 302 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE | 35 | 302 | - | - | |
Csa03g02434 | 302 | PANTHER | - | 35 | 302 | - | - | |
Csa03g02434 | 302 | Coils | Coil | 213 | 240 | - | - | |
Csa03g02434 | 302 | Gene3D | - | 155 | 205 | - | - | |
Csa03g02434 | 302 | Pfam | Homeobox associated leucine zipper | 207 | 240 | IPR003106 | GO:0006355|GO:0043565 | |
Csa03g02434 | 302 | SUPERFAMILY | Homeodomain-like | 142 | 208 | IPR009057 | - | |
Csa03g02434 | 302 | Pfam | Homeodomain | 151 | 205 | IPR001356 | GO:0003677 | |
Csa03g02434 | 302 | ProSiteProfiles | 'Homeobox' domain profile. | 147 | 207 | IPR001356 | GO:0003677 | |
Csa03g02434 | 302 | CDD | homeodomain | 151 | 208 | IPR001356 | GO:0003677 | |
Csa03g02434 | 302 | ProSitePatterns | 'Homeobox' domain signature. | 182 | 205 | IPR017970 | GO:0000981|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g02434 | Csa-Chr3:22508106 | Csa07g02054 | Csa-Chr7:19866731 | 3.75E-65 | dispersed | |
Csa03g02434 | Csa-Chr3:22508106 | Csa06g03058 | Csa-Chr6:26295272 | 6.11E-93 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31277 | PF00046 | Homeodomain | 1.10E-15 | CL0123 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g02434 | K09338 | - | csv:101205848 | 516.153 |