Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02434 ATGTGTTCCCCACAACCATGTGAACTAGGGGATTCGAGCACGAAAAGGAAATTAAGTAATTGTGGGGGCGGGGTTCTTTTTTTTTTGTTCACTATTAATAATGTGAAGATAATAGGGTTGGTCTTGGGATTAGGGCTCTCGGAATTAGCTGACGATCAAAGGACGACATTAAAGAAGAAACCTGCACCTTGCTCCTCCAGTTCACTTGATTTTGAGCCTTGTGTTTTGACTTTGGGATTTTCCGGTGGTGGTGGCGACACTCATCGGAAAGTTATTGATCATGTGGGTCCTCATCATTTGTATCGCCAAGCATCCCCTCATAGCAGCGCTGTTTGTTCTTCGTTCTCGGGTAAGGTTAAAAGAGAGAGAGATCTGAGCAGTGAAGAAGTTGAATTGGAGAGAGCTTGTTGGAGAGTTAGTGATGAAGATGACGATGTTTGTAATAATACTAGAAAGAAGCTTAGACTCTCTAAACAACAATCCGCTCTCTTGGAAGAAAGTTTCAAACAGAATAGCACGCTCAATCCTAAGCAAAAACAAGGGTTAGCAAGACAGCTAAATCTACTGCCACGACAAGTTGAAGTATGGTTTCAGAATAGGAGAGCTCGAACAAAAGTGAAGCAAACAGAAGTAGATTGTGAGTTGTTGAAGAAGTGTTGTGAGACGTTGACGGATGAAAATAGAAGATTACAAAAGGAGGTTCAAGAATTGAAGGCAATAAAGCTGGCAAAACCGGTATACATGCAGATGTCAGGGGCGACATTAACCATATGCCCCTCATGCGAAAGGGTGGGTACTGGCGGCCATGGTGGTGTCGCGGACGGTAATTCTAATCCCAAACCCAAATTTTCAATGCCTCCTAACCCTTTCTTTTACAATCCCTTCTCCAATCCTTCAGCCGCTTGTTAG 909 43.23 MCSPQPCELGDSSTKRKLSNCGGGVLFFLFTINNVKIIGLVLGLGLSELADDQRTTLKKKPAPCSSSSLDFEPCVLTLGFSGGGGDTHRKVIDHVGPHHLYRQASPHSSAVCSSFSGKVKRERDLSSEEVELERACWRVSDEDDDVCNNTRKKLRLSKQQSALLEESFKQNSTLNPKQKQGLARQLNLLPRQVEVWFQNRRARTKVKQTEVDCELLKKCCETLTDENRRLQKEVQELKAIKLAKPVYMQMSGATLTICPSCERVGTGGHGGVADGNSNPKPKFSMPPNPFFYNPFSNPSAAC* 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22508106 22510600 - CsaV3_3G026410.1 Csa03g02434 523339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02434 302 SMART HOX_1 149 211 IPR001356 GO:0003677
Csa03g02434 302 SMART halz 207 250 IPR003106 GO:0006355|GO:0043565
Csa03g02434 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 35 302 - -
Csa03g02434 302 PANTHER - 35 302 - -
Csa03g02434 302 Coils Coil 213 240 - -
Csa03g02434 302 Gene3D - 155 205 - -
Csa03g02434 302 Pfam Homeobox associated leucine zipper 207 240 IPR003106 GO:0006355|GO:0043565
Csa03g02434 302 SUPERFAMILY Homeodomain-like 142 208 IPR009057 -
Csa03g02434 302 Pfam Homeodomain 151 205 IPR001356 GO:0003677
Csa03g02434 302 ProSiteProfiles 'Homeobox' domain profile. 147 207 IPR001356 GO:0003677
Csa03g02434 302 CDD homeodomain 151 208 IPR001356 GO:0003677
Csa03g02434 302 ProSitePatterns 'Homeobox' domain signature. 182 205 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02434 Csa-Chr3:22508106 Csa07g02054 Csa-Chr7:19866731 3.75E-65 dispersed
Csa03g02434 Csa-Chr3:22508106 Csa06g03058 Csa-Chr6:26295272 6.11E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31277 PF00046 Homeodomain 1.10E-15 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02434 K09338 - csv:101205848 516.153