Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02453 ATGGAGGACTACAACAACAACAATGATGATGATCAACAACAGATTATAAAGATAGAAGATACTAGCACTATCACTGATGGCGGCGGCGGAGGCGACGGTGGTGGTCGTGGTGGTGGTGATGGTGGGGTTTTCTCATTTTCCGATAACATAATACCAAATGGATTGTTTGATTTTTGTGATGGTGATAAATGCTCTGTTGGGTTTATGGAGTTGCTTGGTCTTAATTACAATTCTGAATTTACTGAGGCTTTTAATAATCCTCCAGCCACCCCCAATTGTTCGTCCTCCGTCTCCTCCGCCTCTAGCGACGCTCTTAACGACGACGAACCACCACCACCACCACCACAACAACAACAACAACAACACAGCCCCACTAAACAATTGAAAGGGATAAAAAAGAGGAAGGAGAAGGAGAAGGAGAAGAAAGCAAGATTCGCATTCATGACAAAGAGTGAAGTTGATCATCTAGAAGATGGTTATCGATGGAGAAAGTACGGCCAAAAAGCTGTCAAAAACAGCCCTTTTCCTAGAAGTTATTACCGTTGCACGAGTGCAGCATGTAATGTAAAGAAGAGAGTTGAACGATCTTTTGCTGATCCAACTGTAGTGGTGACCACCTATGAAGGCCAACACACTCACCCAAGCCCTATCCTTAGCCGGTCCGCCCTAGCCGTCGCCATTCCACCTCCCTCTTTCATCCCTGGGGCGGGCGGAGAGTGTGTTGGGGGCGTTGTAGCCATGCCATGGCTCAAACCTAGCAACAATGATGCTCATGATGGTAACACGGTTCCAGCAATGTCTCATCAATACTTTCAAAACTCGACCTACATCACTGCCCAAAATGTAGCCGCCAACTATAACCGAAACAACCACATCGGAGCAGCGAACGCGGCCGGAATCCTCCAGGAGAAACGGTTTTGTAACCCAAATTCTAGTTTTCTTGTAGACCATGGCCTGCTTCAAGATGTTGTTCCTCCCCACATGCTGAAACAGGAGTAA 999 46.75 MEDYNNNNDDDQQQIIKIEDTSTITDGGGGGDGGGRGGGDGGVFSFSDNIIPNGLFDFCDGDKCSVGFMELLGLNYNSEFTEAFNNPPATPNCSSSVSSASSDALNDDEPPPPPPQQQQQQHSPTKQLKGIKKRKEKEKEKKARFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSAACNVKKRVERSFADPTVVVTTYEGQHTHPSPILSRSALAVAIPPPSFIPGAGGECVGGVVAMPWLKPSNNDAHDGNTVPAMSHQYFQNSTYITAQNVAANYNRNNHIGAANAAGILQEKRFCNPNSSFLVDHGLLQDVVPPHMLKQE* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22733862 22737626 - CsaV3_3G026600.1 Csa03g02453 523358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02453 332 MobiDBLite consensus disorder prediction 87 143 - -
Csa03g02453 332 MobiDBLite consensus disorder prediction 1 40 - -
Csa03g02453 332 Gene3D WRKY domain 141 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g02453 332 MobiDBLite consensus disorder prediction 87 105 - -
Csa03g02453 332 SMART WRKY_cls 156 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g02453 332 Pfam WRKY DNA -binding domain 157 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g02453 332 Coils Coil 1 21 - -
Csa03g02453 332 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 77 324 IPR044810 GO:0003700
Csa03g02453 332 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 77 324 - -
Csa03g02453 332 ProSiteProfiles WRKY domain profile. 151 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g02453 332 SUPERFAMILY WRKY DNA-binding domain 148 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02453 Csa-Chr3:22733862 Csa07g01922 Csa-Chr7:19053279 3.41E-51 dispersed
Csa03g02453 Csa-Chr3:22733862 Csa06g01184 Csa-Chr6:10004976 1.46E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31279 PF03106 WRKY 2.90E-26 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02453 - - cmo:103489912 516.153