Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02456 ATGGAGATTCTAAGGACTCCATTTAGGGGTATTCTCAATGATATTAGAAGAAGAGCTGCCTGTTATAAACAAGATTGGATTGATGGTCGAATTTCAGGAATTGGAATTTTGGCCCCAACTGCTTATATTTTTTTCGCTTCTGCACTTCCTGTCATTGCTTTTGGTGAGCAATTGAGCCGAGATACAGATGGAAGATTGAGCACAGTAGAAACATTGGCTTCCACTGCCATTTGTGGTATCCTTCATTCAATTCTTGGTGGGCAACCTCTCCTAGTTGTAGGGGTTGCAGAACCAACAATTATTATGTATACCTATTTGTACAATTTTTGCAAGGAAAGGAAAGATATAGGGGGAGACCTCTTCTTGGCTTGGGCAGGATGGGTTTGTGTCTGGACAGCTCTCTTGCTGTTTCTTCTTGCTATATTCAATGCTTCCAGGCTTATCAACAAATTTACAAGGACTGCAGGGGAACTTTTTGGCATGTTAATCTCTGTTTTGTTCATTCAAGAAGCTATTAAGGGAGTGGTGAGCGAATTTGAAGTTCCTGAGACTGAGAATACAAGTTTAGAGAATTATCAATTTCATTGGATTTACACCAATGGCTTACTGGGAATCATTTTTACTTTTGGCCTTCTCTATACTGCCTTGAAGAGCAGAAAGGCAAGATCGTGGTTGTATGGGACAGGCTGGCTAAGGAGTTTCATTGCAGACTATGGAGTTCCTCTGATGGTTGTAGTATGGACTGCACTATCATTTAGTGTACCAAGCAAAGTCCCAGTTGGAGTACCTAGAAGACTTCAAAGTCCTTTGGCATGGCAATCTACTTCGCTGAACCATTGGACCATCGTCAAGGACATGGGGAAGATACCTCCTGCATACATCTTTGCGGCCTTTATTCCTGCTGTGATGATTGCAGGACTTTATTTTTTTGATCACAGTGTTGCTTCTCAGATGGCACAACAAAAGGAGTTTAATCTCAAGAACCCTTCTGCTTACCACTATGACATTCTGTTGCTGGGGTTTATGACATTGCTTTGTGGGTTGATCGGGCTTCCTCCTTCAAATGGGGTTTTGCCACAGTCCCCTATGCACACCAAGTGCCTTGCAACTCTTAGAAGGCGTTTGATGCGAAGAAAGATGGTAAAAAGTGCAAAGGAAAGCATAGAAAGAAAAGCTAGTGATTCCGAAATCTATGGCCAAATGCAAGCTGTGTTCTTAGAAATGGAAAGCAACCCAATTACGACAACAGTGGTCAAAGAGCTGGAAGATTTGAAGGAGGCAGTCATGAAAGGTGAAAGTAAGGATGAAAATGCAAATGTCACATTCGACCTAGAGAAGCATATTGATGCTTATCTTCCCGTTAGAGTGAACGAGCAAAGGTTGAGCAATCTGTTGCAATCACTTCTGGTGGCAGCATCAGTATTTGCTTTACCAGCAATAAAGAAGATACCAACGTCAGTTCTCTGGGGATACTTCGCGTATATGGCCATTGACAGTCTACCTGGAAACCAATTTTGGGAAAGGATTTTACTTCTCTTTGTAATGCCTAGTCGACGTTATAAGGTCCTAGAAGGTTTTCATGCTTCTTTTGTGGAGTCTGTTCCATTCAAATACATAGCCGCATTCACTCTATTTCAATTTGTATATTTACTCCTTTGTTTTGGAGTGACTTGGATTCCCATCGCTGGAGTCTTGTTTCCCTTGCCTTTCTTCCTTCTCATCGGCATCAGACATCGTGTCCTTCCCAAGCTACTCCAGCCTCATTATTTGCAGGAGCTCGACGCAGTTGAGTACGAAGAAGTAACCGGTACCTCAGTTCTCTCGCTTAGCCTGTCTCTCAAGGAAAAGAATTCCACTCATATAGTTGATAGCGAAGATGAAGTTAAAATATGTGATGCTGAAATACTTGATGAGTTGACAACCCATAGAGGGGAATTGAAAGTTAGAACTAAAAGCTTCAATGAGGATAGACACAATCAGATTCATCCTGACCAAAGGCATTGGTAA 2007 41.9 MEILRTPFRGILNDIRRRAACYKQDWIDGRISGIGILAPTAYIFFASALPVIAFGEQLSRDTDGRLSTVETLASTAICGILHSILGGQPLLVVGVAEPTIIMYTYLYNFCKERKDIGGDLFLAWAGWVCVWTALLLFLLAIFNASRLINKFTRTAGELFGMLISVLFIQEAIKGVVSEFEVPETENTSLENYQFHWIYTNGLLGIIFTFGLLYTALKSRKARSWLYGTGWLRSFIADYGVPLMVVVWTALSFSVPSKVPVGVPRRLQSPLAWQSTSLNHWTIVKDMGKIPPAYIFAAFIPAVMIAGLYFFDHSVASQMAQQKEFNLKNPSAYHYDILLLGFMTLLCGLIGLPPSNGVLPQSPMHTKCLATLRRRLMRRKMVKSAKESIERKASDSEIYGQMQAVFLEMESNPITTTVVKELEDLKEAVMKGESKDENANVTFDLEKHIDAYLPVRVNEQRLSNLLQSLLVAASVFALPAIKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVMPSRRYKVLEGFHASFVESVPFKYIAAFTLFQFVYLLLCFGVTWIPIAGVLFPLPFFLLIGIRHRVLPKLLQPHYLQELDAVEYEEVTGTSVLSLSLSLKEKNSTHIVDSEDEVKICDAEILDELTTHRGELKVRTKSFNEDRHNQIHPDQRHW* 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22772161 22777277 - CsaV3_3G026630.1 Csa03g02456 523361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02456 668 PANTHER BORON TRANSPORTER 4-RELATED 1 665 - -
Csa03g02456 668 PANTHER ANION EXCHANGE PROTEIN 1 665 IPR003020 GO:0005452|GO:0006820|GO:0016020
Csa03g02456 668 Gene3D Helical hairpin bin 18 60 - -
Csa03g02456 668 Pfam HCO3- transporter family 454 544 IPR011531 GO:0006820|GO:0016021
Csa03g02456 668 Pfam HCO3- transporter family 187 374 IPR011531 GO:0006820|GO:0016021
Csa03g02456 668 Pfam HCO3- transporter family 7 183 IPR011531 GO:0006820|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02363 Csa-Chr2:20959742 Csa03g02456 Csa-Chr3:22772161 0 dispersed
Csa03g02456 Csa-Chr3:22772161 Csa03g02859 Csa-Chr3:27379811 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02456 K24194 - csv:101210964 1266.52