Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02480 ATGGATCCTAAAACCTCATCAACAACAAAGCAGCCCCAAGAAGAAGTGGTACCCAACTTTTTTAAGCTCTCACAAGAAGAAGCAGCAGAAGAAGTTGCAATCATGGGTGAAAATAAACCTGCTGAAATCAAAGATTTTCAAATAGCAATTGCAGAGAAAGAAGAAGGAAAAAAACAGTTAGCCCCCAAAAGAAGCTCCAACAAAGACCGTCACACCAAAGTTGAAGGCAGAGGCCGAAGAATCCGTATGCCAGCTCTATGTGCTGCTAGGATTTTTCAATTGACTAGAGAATTGGATCATAAATCCGACGGCGAAACCATCCAGTGGTTGCTACAGCAGGCGGAGCCGTCTATAATCGCCGCCACAGGCACCGGAACCATTCCTGCTTCTGCTCTAGCCGCGGCAGCTGGTTCTGTTTCACAACAGGGTGCTTCTTTGTCGGCCGGATTGCATCAAAAGTTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGCGACCCCATTTGGCCGCCACTCCCACTGCCCTTTGGCCCTCATCCGTCACTGGCTTTGGTTTTCAGTCTTCGACTGCCGCTGCTGCTGTTGCTGCTCAATCAGCTACTAATTTACCTAATGAAACTTCAAATTACTTTCACAAACTTGGTTTCCCACCTTTTGATTTAACCCCCACCAACATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGCCAACACTCAACAATTGCCTGGTTTGGAGCTTGGATTGTCCCAAGATGGTCATATCGGGGTCCTAAATCCTCAAGCTCTTAACCAAATTTACCAACAGATGGGACAACCTAGAGTTCATCAACATCACCACCAGCAACCTCCTGCTAAGGATGATTCTCAAGATTCAGCCTAG 891 47.36 MDPKTSSTTKQPQEEVVPNFFKLSQEEAAEEVAIMGENKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELDHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGRPHLAATPTALWPSSVTGFGFQSSTAAAAVAAQSATNLPNETSNYFHKLGFPPFDLTPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQHHHQQPPAKDDSQDSA* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23172125 23175442 - CsaV3_3G026870.1 Csa03g02480 523385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02480 296 Pfam TCP family transcription factor 66 156 IPR017887 -
Csa03g02480 296 MobiDBLite consensus disorder prediction 274 296 - -
Csa03g02480 296 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 37 295 IPR005333 GO:0003700
Csa03g02480 296 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 37 295 - -
Csa03g02480 296 ProSiteProfiles TCP domain profile. 67 121 IPR017887 -
Csa03g02480 296 MobiDBLite consensus disorder prediction 54 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02480 Csa-Chr3:23172125 Csa06g00596 Csa-Chr6:5060846 4.75E-37 dispersed
Csa03g02480 Csa-Chr3:23172125 Csa06g00805 Csa-Chr6:6456718 6.57E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31281 PF03634 TCP 3.30E-30 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02480 - - csv:101222902 556.214