Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02480 ATGGATCCTAAAACCTCATCAACAACAAAGCAGCCCCAAGAAGAAGTGGTACCCAACTTTTTTAAGCTCTCACAAGAAGAAGCAGCAGAAGAAGTTGCAATCATGGGTGAAAATAAACCTGCTGAAATCAAAGATTTTCAAATAGCAATTGCAGAGAAAGAAGAAGGAAAAAAACAGTTAGCCCCCAAAAGAAGCTCCAACAAAGACCGTCACACCAAAGTTGAAGGCAGAGGCCGAAGAATCCGTATGCCAGCTCTATGTGCTGCTAGGATTTTTCAATTGACTAGAGAATTGGATCATAAATCCGACGGCGAAACCATCCAGTGGTTGCTACAGCAGGCGGAGCCGTCTATAATCGCCGCCACAGGCACCGGAACCATTCCTGCTTCTGCTCTAGCCGCGGCAGCTGGTTCTGTTTCACAACAGGGTGCTTCTTTGTCGGCCGGATTGCATCAAAAGTTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGCGACCCCATTTGGCCGCCACTCCCACTGCCCTTTGGCCCTCATCCGTCACTGGCTTTGGTTTTCAGTCTTCGACTGCCGCTGCTGCTGTTGCTGCTCAATCAGCTACTAATTTACCTAATGAAACTTCAAATTACTTTCACAAACTTGGTTTCCCACCTTTTGATTTAACCCCCACCAACATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGCCAACACTCAACAATTGCCTGGTTTGGAGCTTGGATTGTCCCAAGATGGTCATATCGGGGTCCTAAATCCTCAAGCTCTTAACCAAATTTACCAACAGATGGGACAACCTAGAGTTCATCAACATCACCACCAGCAACCTCCTGCTAAGGATGATTCTCAAGATTCAGCCTAG 891 47.36 MDPKTSSTTKQPQEEVVPNFFKLSQEEAAEEVAIMGENKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELDHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGRPHLAATPTALWPSSVTGFGFQSSTAAAAVAAQSATNLPNETSNYFHKLGFPPFDLTPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQHHHQQPPAKDDSQDSA* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23172125 23175442 - CsaV3_3G026870.1 Csa03g02480 523385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02480 296 Pfam TCP family transcription factor 66 156 IPR017887 -
Csa03g02480 296 MobiDBLite consensus disorder prediction 274 296 - -
Csa03g02480 296 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 37 295 IPR005333 GO:0003700
Csa03g02480 296 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 37 295 - -
Csa03g02480 296 ProSiteProfiles TCP domain profile. 67 121 IPR017887 -
Csa03g02480 296 MobiDBLite consensus disorder prediction 54 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02480 - - - csv:101222902 556.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02480 Csa-Chr3:23172125 Csa06g00596 Csa-Chr6:5060846 4.75E-37 dispersed
Csa03g02480 Csa-Chr3:23172125 Csa06g00805 Csa-Chr6:6456718 6.57E-70 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01450 . 44 265 TCP Transcription Factor Family AT5G23280 62.0 5.9e-64 241.1
Csa05g00601 . 34 257 TCP Transcription Factor Family AT5G23280 59.1 8.8e-60 227.3
Csa06g00596 . 65 324 TCP Transcription Factor Family AT2G45680 54.1 6.8e-66 248.1
Csa05g02440 . 70 164 TCP Transcription Factor Family AT3G47620 89.7 8.0e-41 165.2
Csa01g00533 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Csa05g02171 . 47 148 TCP Transcription Factor Family AT1G69690 78.8 2.7e-37 152.9
Csa03g02480 . 42 295 TCP Transcription Factor Family AT3G27010 54.6 1.2e-58 223.8
Csa06g00805 . 36 268 TCP Transcription Factor Family AT3G27010 51.6 1.1e-51 200.7
Csa05g00601 . 4 254 TCP Transcription Factor Family AT5G08330 54.8 2.8e-63 238.8
Csa05g01450 . 30 263 TCP Transcription Factor Family AT5G08330 59.3 9.0e-62 233.8
Csa04g01035 . 38 172 TCP Transcription Factor Family AT3G02150 57.4 1.1e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31281 PF03634 TCP 3.30E-30 No_clan Csa TF