Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02485 ATGGAGAATTATCAAATGTTTTTTCCTTGCTCCGATGGGGGCGGAGGACTGTCAGCCTATCATCATGCCGACATGTCGTCCGGCGGTGCTTCTGATATGTTCGGTAATTTTCAGGGTGGCGATATGGAGGCGGTAAGTGGGTTTTTGGGGATGAAAAGAGAGGTGGATGGCGGGGCGGTGGAAGCAGAGGGCGGAGGGAAAAAGAAGGGAGAGAAGAAGGTGAGGAAACCGAGATATGCTTTTCAGACAAGAAGCCAAGTTGACATTCTTGACGATGGGTATCGTTGGAGAAAATATGGTCAAAAAGCCGTCAAAAACAACAAGTTCCCGAGGAGCTATTATAGATGCACACATCAAGGATGCAATGTGAAGAAACAAGTGCAGAGGCTAACGAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGAATGCACACACACTCCATTGATAAGCCAACAGATAACTTTGAACAAATATTGAGTAGAATGCAGATTTATAGTACTCCTTTTTGA 513 45.61 MENYQMFFPCSDGGGGLSAYHHADMSSGGASDMFGNFQGGDMEAVSGFLGMKREVDGGAVEAEGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF* 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23279533 23282478 + CsaV3_3G026920.1 Csa03g02485 523390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02485 170 ProSiteProfiles WRKY domain profile. 85 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g02485 170 SUPERFAMILY WRKY DNA-binding domain 82 149 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g02485 170 Pfam WRKY DNA -binding domain 91 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g02485 170 Gene3D WRKY domain 67 150 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g02485 170 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 54 165 IPR044810 GO:0003700
Csa03g02485 170 SMART WRKY_cls 90 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g02485 170 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 54 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02485 Csa-Chr3:23279533 Csa04g00303 Csa-Chr4:1881152 1.08E-59 dispersed
Csa03g02485 Csa-Chr3:23279533 Csa04g00612 Csa-Chr4:4045602 2.51E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31282 PF03106 WRKY 3.30E-26 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02485 - - csv:101219349 313.538