Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g02486 | ATGGATTGGGGTTGGGGAAAGTTTTCTGGAGAACCCATTTTTCCTGAAAACAAACAGAATCCTCCCTCCACTTTCTCTGACTCGATTGGCTCCAACAAGGGTTCCAGTCAAGAAAGTTCTTCCTCTCATGGATCCTCTAAAAGGACTCGATTACTCCATGCCAACCAAAACCAGACGTGTTTGGTCGATGGATGTGACACTGACCTCACCAATTGCAAGGATTATCATCGACGCCATAGGGTATGCGATTCTCACTCCAAAACCCCTGTTGTGATGGTTAGAGGAGAGGAGAAACGATTCTGTCAACAGTGTAGCAGATTCCATTCGCTTGGTGAGTTTGATGAGGTGAAGAGGAGCTGTAGGAAGCGGCTTGATGGCCATAATCGACGTCGGAGGAAGCCTCAGCCTGAATCACTGTTTATGAGTTCAAGTGATTTTCTGTCAAATTGTAAAGGTCCAATTGTGCTGCAGTTCAGTGATCAACAGATTCATCATGTGTCCGAGGAAATTGGTAGGAGTTTATGGCCTGTTAGGACTGAAGGTGAAAAGAAATCTTCAATGGTTCCATCAAATTCCTCTGCTTACTTCAGTTATGGAAGAGGAGATAACAAAGAGTTGCCATTTTTCCTGCATAAAAATGGCAAAAGACAAAGCAAGCAAATAGTTTCTTCTCAGCTGTCTTTCAATCAGCAACTTCCTAATGTAATCTCTCAGGGTAGTGAGGTGGACAACCAGAAACCAGTGACCACCGATACTTCGCCCGAGGATTCGGGTTGTGCTCTCTATCTTCTGTCATCACGCACAGTGCAAGCTCACTCGGATGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTGTTCCAGTCCAAACTCATGAGACTGAGCTGCATTTCAGTAGTCTAAGTGACTTCTCTGGCTCCTTTGACTCTAAGGACAAGCCTGTTTCTTCTCAGTTGGGTCTTGAAATGGAGGAAGAATCTGATGGTTTGTTCCAAAGTGAGGCTCCCCATAAGTTTCCCATTTCTTGGGAGTAG | 1035 | 45.22 | MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTCLVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSSDFLSNCKGPIVLQFSDQQIHHVSEEIGRSLWPVRTEGEKKSSMVPSNSSAYFSYGRGDNKELPFFLHKNGKRQSKQIVSSQLSFNQQLPNVISQGSEVDNQKPVTTDTSPEDSGCALYLLSSRTVQAHSDAGLSSLVQSHLSVPVQTHETELHFSSLSDFSGSFDSKDKPVSSQLGLEMEEESDGLFQSEAPHKFPISWE* | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 23310445 | 23314127 | + | CsaV3_3G026930.1 | Csa03g02486 | 523391 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g02486 | 344 | Gene3D | - | 52 | 121 | IPR036893 | GO:0003677|GO:0005634 | |
Csa03g02486 | 344 | MobiDBLite | consensus disorder prediction | 16 | 49 | - | - | |
Csa03g02486 | 344 | ProSiteProfiles | Zinc finger SBP-type profile. | 57 | 134 | IPR004333 | GO:0003677 | |
Csa03g02486 | 344 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 33 | 344 | IPR044817 | GO:0003677 | |
Csa03g02486 | 344 | Pfam | SBP domain | 60 | 133 | IPR004333 | GO:0003677 | |
Csa03g02486 | 344 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Csa03g02486 | 344 | PANTHER | TRANSCRIPTION FACTOR SBP FAMILY-RELATED | 33 | 344 | - | - | |
Csa03g02486 | 344 | MobiDBLite | consensus disorder prediction | 305 | 344 | - | - | |
Csa03g02486 | 344 | SUPERFAMILY | SBT domain | 59 | 139 | IPR036893 | GO:0003677|GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00976 | Csa-Chr1:6034554 | Csa03g02486 | Csa-Chr3:23310445 | 1.73E-44 | dispersed | |
Csa03g02486 | Csa-Chr3:23310445 | Csa03g03589 | Csa-Chr3:32029162 | 9.55E-35 | dispersed | |
Csa01g00045 | Csa-Chr1:262037 | Csa03g02486 | Csa-Chr3:23310445 | 8.97E-43 | wgd | |
Csa03g02486 | Csa-Chr3:23310445 | Csa06g00818 | Csa-Chr6:6551819 | 9.54E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31283 | PF03110 | SBP | 2.20E-30 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g02486 | - | - | csv:101219589 | 675.626 |