Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02486 ATGGATTGGGGTTGGGGAAAGTTTTCTGGAGAACCCATTTTTCCTGAAAACAAACAGAATCCTCCCTCCACTTTCTCTGACTCGATTGGCTCCAACAAGGGTTCCAGTCAAGAAAGTTCTTCCTCTCATGGATCCTCTAAAAGGACTCGATTACTCCATGCCAACCAAAACCAGACGTGTTTGGTCGATGGATGTGACACTGACCTCACCAATTGCAAGGATTATCATCGACGCCATAGGGTATGCGATTCTCACTCCAAAACCCCTGTTGTGATGGTTAGAGGAGAGGAGAAACGATTCTGTCAACAGTGTAGCAGATTCCATTCGCTTGGTGAGTTTGATGAGGTGAAGAGGAGCTGTAGGAAGCGGCTTGATGGCCATAATCGACGTCGGAGGAAGCCTCAGCCTGAATCACTGTTTATGAGTTCAAGTGATTTTCTGTCAAATTGTAAAGGTCCAATTGTGCTGCAGTTCAGTGATCAACAGATTCATCATGTGTCCGAGGAAATTGGTAGGAGTTTATGGCCTGTTAGGACTGAAGGTGAAAAGAAATCTTCAATGGTTCCATCAAATTCCTCTGCTTACTTCAGTTATGGAAGAGGAGATAACAAAGAGTTGCCATTTTTCCTGCATAAAAATGGCAAAAGACAAAGCAAGCAAATAGTTTCTTCTCAGCTGTCTTTCAATCAGCAACTTCCTAATGTAATCTCTCAGGGTAGTGAGGTGGACAACCAGAAACCAGTGACCACCGATACTTCGCCCGAGGATTCGGGTTGTGCTCTCTATCTTCTGTCATCACGCACAGTGCAAGCTCACTCGGATGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTGTTCCAGTCCAAACTCATGAGACTGAGCTGCATTTCAGTAGTCTAAGTGACTTCTCTGGCTCCTTTGACTCTAAGGACAAGCCTGTTTCTTCTCAGTTGGGTCTTGAAATGGAGGAAGAATCTGATGGTTTGTTCCAAAGTGAGGCTCCCCATAAGTTTCCCATTTCTTGGGAGTAG 1035 45.22 MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTCLVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSSDFLSNCKGPIVLQFSDQQIHHVSEEIGRSLWPVRTEGEKKSSMVPSNSSAYFSYGRGDNKELPFFLHKNGKRQSKQIVSSQLSFNQQLPNVISQGSEVDNQKPVTTDTSPEDSGCALYLLSSRTVQAHSDAGLSSLVQSHLSVPVQTHETELHFSSLSDFSGSFDSKDKPVSSQLGLEMEEESDGLFQSEAPHKFPISWE* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23310445 23314127 + CsaV3_3G026930.1 Csa03g02486 523391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02486 344 Gene3D - 52 121 IPR036893 GO:0003677|GO:0005634
Csa03g02486 344 MobiDBLite consensus disorder prediction 16 49 - -
Csa03g02486 344 ProSiteProfiles Zinc finger SBP-type profile. 57 134 IPR004333 GO:0003677
Csa03g02486 344 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 344 IPR044817 GO:0003677
Csa03g02486 344 Pfam SBP domain 60 133 IPR004333 GO:0003677
Csa03g02486 344 MobiDBLite consensus disorder prediction 1 49 - -
Csa03g02486 344 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 33 344 - -
Csa03g02486 344 MobiDBLite consensus disorder prediction 305 344 - -
Csa03g02486 344 SUPERFAMILY SBT domain 59 139 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00976 Csa-Chr1:6034554 Csa03g02486 Csa-Chr3:23310445 1.73E-44 dispersed
Csa03g02486 Csa-Chr3:23310445 Csa03g03589 Csa-Chr3:32029162 9.55E-35 dispersed
Csa01g00045 Csa-Chr1:262037 Csa03g02486 Csa-Chr3:23310445 8.97E-43 wgd
Csa03g02486 Csa-Chr3:23310445 Csa06g00818 Csa-Chr6:6551819 9.54E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31283 PF03110 SBP 2.20E-30 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02486 - - csv:101219589 675.626