Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02486 ATGGATTGGGGTTGGGGAAAGTTTTCTGGAGAACCCATTTTTCCTGAAAACAAACAGAATCCTCCCTCCACTTTCTCTGACTCGATTGGCTCCAACAAGGGTTCCAGTCAAGAAAGTTCTTCCTCTCATGGATCCTCTAAAAGGACTCGATTACTCCATGCCAACCAAAACCAGACGTGTTTGGTCGATGGATGTGACACTGACCTCACCAATTGCAAGGATTATCATCGACGCCATAGGGTATGCGATTCTCACTCCAAAACCCCTGTTGTGATGGTTAGAGGAGAGGAGAAACGATTCTGTCAACAGTGTAGCAGATTCCATTCGCTTGGTGAGTTTGATGAGGTGAAGAGGAGCTGTAGGAAGCGGCTTGATGGCCATAATCGACGTCGGAGGAAGCCTCAGCCTGAATCACTGTTTATGAGTTCAAGTGATTTTCTGTCAAATTGTAAAGGTCCAATTGTGCTGCAGTTCAGTGATCAACAGATTCATCATGTGTCCGAGGAAATTGGTAGGAGTTTATGGCCTGTTAGGACTGAAGGTGAAAAGAAATCTTCAATGGTTCCATCAAATTCCTCTGCTTACTTCAGTTATGGAAGAGGAGATAACAAAGAGTTGCCATTTTTCCTGCATAAAAATGGCAAAAGACAAAGCAAGCAAATAGTTTCTTCTCAGCTGTCTTTCAATCAGCAACTTCCTAATGTAATCTCTCAGGGTAGTGAGGTGGACAACCAGAAACCAGTGACCACCGATACTTCGCCCGAGGATTCGGGTTGTGCTCTCTATCTTCTGTCATCACGCACAGTGCAAGCTCACTCGGATGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTGTTCCAGTCCAAACTCATGAGACTGAGCTGCATTTCAGTAGTCTAAGTGACTTCTCTGGCTCCTTTGACTCTAAGGACAAGCCTGTTTCTTCTCAGTTGGGTCTTGAAATGGAGGAAGAATCTGATGGTTTGTTCCAAAGTGAGGCTCCCCATAAGTTTCCCATTTCTTGGGAGTAG 1035 45.22 MDWGWGKFSGEPIFPENKQNPPSTFSDSIGSNKGSSQESSSSHGSSKRTRLLHANQNQTCLVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSSDFLSNCKGPIVLQFSDQQIHHVSEEIGRSLWPVRTEGEKKSSMVPSNSSAYFSYGRGDNKELPFFLHKNGKRQSKQIVSSQLSFNQQLPNVISQGSEVDNQKPVTTDTSPEDSGCALYLLSSRTVQAHSDAGLSSLVQSHLSVPVQTHETELHFSSLSDFSGSFDSKDKPVSSQLGLEMEEESDGLFQSEAPHKFPISWE* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23310445 23314127 + CsaV3_3G026930.1 Csa03g02486 523391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02486 344 Gene3D - 52 121 IPR036893 GO:0003677|GO:0005634
Csa03g02486 344 MobiDBLite consensus disorder prediction 16 49 - -
Csa03g02486 344 ProSiteProfiles Zinc finger SBP-type profile. 57 134 IPR004333 GO:0003677
Csa03g02486 344 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 344 IPR044817 GO:0003677
Csa03g02486 344 Pfam SBP domain 60 133 IPR004333 GO:0003677
Csa03g02486 344 MobiDBLite consensus disorder prediction 1 49 - -
Csa03g02486 344 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 33 344 - -
Csa03g02486 344 MobiDBLite consensus disorder prediction 305 344 - -
Csa03g02486 344 SUPERFAMILY SBT domain 59 139 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02486 - - - csv:101219589 675.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00976 Csa-Chr1:6034554 Csa03g02486 Csa-Chr3:23310445 1.73E-44 dispersed
Csa03g02486 Csa-Chr3:23310445 Csa03g03589 Csa-Chr3:32029162 9.55E-35 dispersed
Csa01g00045 Csa-Chr1:262037 Csa03g02486 Csa-Chr3:23310445 8.97E-43 wgd
Csa03g02486 Csa-Chr3:23310445 Csa06g00818 Csa-Chr6:6551819 9.54E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1148 . . . . . . . . Cmo14g00739 Cmo11g01608 Cma11g01513 Cma14g00725 Car11g01303 Car14g00662 . Cpe03g00630 . . . . . . . . . . . . . . . Cone11ag0042 Cone18ag1438 . . . . Chy06g01539 Cme06g01786 . . Bda07g01385 . Bpe09g00547 Bpe11g01487 . . . . . . . . . . . Bhi01g02096 . . . Hepe02g1698 . . Cla05g01423 Cam05g1511 Cec05g1523 Cco05g1559 Clacu05g1518 Cmu05g1426 Cre05g1528 . Csa03g02486 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g02851 . 181 1014 SBP-box Gene Family AT2G47070 55.5 1.3e-239 826.2
Csa03g02851 . 25 1014 SBP-box Gene Family AT3G60030 54.5 8.6e-278 953.4
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50570 59.5 4.6e-38 155.6
Csa04g02750 . 1 1032 SBP-box Gene Family AT1G20980 50.5 8.7e-263 903.7
Csa04g02750 . 1 693 SBP-box Gene Family AT1G76580 50.8 4.3e-165 578.6
Csa01g00620 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Csa03g02851 . 181 1014 SBP-box Gene Family AT2G47070 55.5 1.3e-239 826.2
Csa01g00620 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Csa03g02851 . 25 1014 SBP-box Gene Family AT3G60030 54.5 8.6e-278 953.4
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50570 59.5 4.6e-38 155.6
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50670 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50670 59.5 4.6e-38 155.6
Csa04g02750 . 1 1032 SBP-box Gene Family AT1G20980 50.5 8.7e-263 903.7
Csa04g02750 . 1 693 SBP-box Gene Family AT1G76580 50.8 4.3e-165 578.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006434 2 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 3 1 1 2 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31283 PF03110 SBP 2.20E-30 No_clan Csa TF