Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02502 ATGGGGAAGAACGAATTTCTGACCCCTAAAGCAATCGCAAACAGAATCAAGGCGAAAGGGCTACAGAAGCTGAGATGGTATTGCCAGATGTGTCAAAAGCAGTGCCGGGATGAGAATGGCTTTAAATGTCACTGTATGAGTGAAAGCCACCAGCGCCAGATGCAGATCTTTGGCCAAAATCCCCATCGTATTGTTGAAGGCTACTCTGAAGAGTTCGAGACATCTTTCATGGAGCACATTAAGCGTAGCCATCGGTTCAGTCGTGTGGCAGCTACAGTTGTCTATAATGAATACATTAACGACAGACATCATATTCATATGAATTCAACGCAGTGGGCTACTCTTACTGAATTTATTAAACATTTGGGTCGAACTGGGCAATGTAAAGTAGAGGAAACTCCCAAGGGTTGGTTCATTACTTACATAGATAGAGACTCAGAGACGCTTTTTAAAGAGAGAATGAAGAATAAGAGGATGCGGGCGGATTTAGCTGAAGAAGAGAAGCAAGAAAGAGAAATAAAGAGGCAAATTGAGAGGGCTGAGCAATTTGCACCTTTGGCTTCCGCATCTGCCGAGCTTTTGGAGGCTGAACAAACAAGAGAGTTGAAATTAGAGAGTGGGGTTAAACTAGGATTTGCTTTGGGAACAACATCAAAATTGAAGGAGAAGAAAGGAGAGAGTTCCAGGGTAGTTTTTGATGAGGATGAGACGTATGAGACTATCAAGGGGAAACCTGAAGGGACTTCCAAAAACAGGATGGGTAGTGGTGGTGGTCTGTCATCTTTGGAGGAATTGATGAAAGAAGAAGAGATGAAGAAGGAGAAGCTTAATAGGAAGGATTACTGGCTTTGTGATGGAATAATTGTAAAGATTATGAGCAAGGATTTGGCTGAAAAGGGGTACTATAAACAGAAGGGAGTTGTGCGAAAAGTGATTGATAAATATGTTGGAGAGATTGAAATGCTTGACGGCAAGCATGTGTTGAGAGTTGATCAAGAAGAATTAGAAACAGTGATACCACAAATTGGTGGCTTAGTAAGAATAGTAAATGGCGCATATCGTGGATCAAATGCTAGGTTGTTAGGTGTTGACACTGATAAGTTTTGTGCTAAAGTGCAAATTGAGAAGGGTGTATACGATGGCAGGGTGCTTAAGGCTGTTGAATATGAAGATATTTGTAAACTTGCATCATAA 1194 41.46 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFETSFMEHIKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFIKHLGRTGQCKVEETPKGWFITYIDRDSETLFKERMKNKRMRADLAEEEKQEREIKRQIERAEQFAPLASASAELLEAEQTRELKLESGVKLGFALGTTSKLKEKKGESSRVVFDEDETYETIKGKPEGTSKNRMGSGGGLSSLEELMKEEEMKKEKLNRKDYWLCDGIIVKIMSKDLAEKGYYKQKGVVRKVIDKYVGEIEMLDGKHVLRVDQEELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAKVQIEKGVYDGRVLKAVEYEDICKLAS* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23476504 23477697 - CsaV3_3G027090.1 Csa03g02502 523407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02502 397 Coils Coil 154 183 - -
Csa03g02502 397 CDD KOW_KIN17 342 395 IPR041995 -
Csa03g02502 397 Gene3D - 286 339 - -
Csa03g02502 397 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Csa03g02502 397 Gene3D - 60 160 IPR038254 -
Csa03g02502 397 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 396 IPR037321 -
Csa03g02502 397 PANTHER BNAA05G13760D PROTEIN 1 396 - -
Csa03g02502 397 Coils Coil 259 279 - -
Csa03g02502 397 SMART Kin17_mid_2 52 178 IPR019447 -
Csa03g02502 397 Pfam KN17 SH3-like C-terminal domain 278 331 IPR041330 -
Csa03g02502 397 Gene3D - 340 396 IPR014722 -
Csa03g02502 397 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02502 Csa-Chr3:23476504 Csa03g02720 Csa-Chr3:25985731 2.34E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02502 K13102 - csv:101216499 746.117