Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa03g02532 | ATGGGAAGGCGATCCATAAGGGTTGCACTTCTCATCTTTTCTCTTCTTCTTTCTTTGCGACCCCACACAGTTTCTTCCACTCTTCCTCTTCAATCATTGAATCAGGGTTCTAATTCTAAAGATTCTGCCAGTGAAAGTACTCCGAAGCAGGACTGGAACAATGCTCATGAGGTACATTGCTCGAGAGAAAGGAGTAGAGCGGCATGGAAAGTAATTGAGGAGTATCTAATGCCCTTTGTGGAAAAAAAGAAATACAAGATTTCTACTAAGTGTAGGCTTCACCCTGATAATGACATGTTCAGAGATCAAGAACAGCACAAGAGCCATCTAGATTTTAATGACTGGAAGTGTGGATATTGTAGAAAAAGATTCTACGAAGAAAAGTATATCGATCAGCATTTTGACAATCGACACTATAATTTGCTCAATGTGAGTCGAAATAGATGCTTGGCAGATCTTTGTGGTGCATTGCACTGTGACCATGTGATTGATGCAGTATCACAGAAAAGTAAATGCAATCCTGCTGCTGCAGCAAGAAATAAACATATGTGTGAGGGCCTTGCTGACAGCTGTTTTCCTGTTGATGAGGGAGCTTTGGCCAGTCATCTTCATGAATTCTTCTTGCACCAGTTCTGTGATGCACACACATGTAGCGGAAAGCCAAAACCTTTCTCCAGAGGTCGACAGGTTCGGAGGAGTGTGTTCTACATTGTTATTTCAGTTTTGACGATCCTTTTTGTTATGTTTTTCTACGTCTTCTTTTACTTGTATAACAGGGGAATGAGAACTCGACCACAGGTGCTGAAGCGTCTCTCACAAAGTGGAAGAAAGAAAAAACCTTCTTAG | 846 | 41.37 | MGRRSIRVALLIFSLLLSLRPHTVSSTLPLQSLNQGSNSKDSASESTPKQDWNNAHEVHCSRERSRAAWKVIEEYLMPFVEKKKYKISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYCRKRFYEEKYIDQHFDNRHYNLLNVSRNRCLADLCGALHCDHVIDAVSQKSKCNPAAAARNKHMCEGLADSCFPVDEGALASHLHEFFLHQFCDAHTCSGKPKPFSRGRQVRRSVFYIVISVLTILFVMFFYVFFYLYNRGMRTRPQVLKRLSQSGRKKKPS* | 282 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 23700124 | 23703621 | - | CsaV3_3G027390.1 | Csa03g02532 | 523437 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa03g02532 | 281 | MobiDBLite | consensus disorder prediction | 28 | 54 | - | - | |
| Csa03g02532 | 281 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 117 | 138 | IPR013087 | - | |
| Csa03g02532 | 281 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 13 | 281 | - | - | |
| Csa03g02532 | 281 | MobiDBLite | consensus disorder prediction | 28 | 58 | - | - | |
| Csa03g02532 | 281 | PANTHER | ZINC FINGER PROTEIN-RELATED | 13 | 281 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g00080 | Csa-Chr1:503860 | Csa03g02532 | Csa-Chr3:23700124 | 8.36E-109 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa03g02532 | - | - | csv:101219582 | 575.474 |