Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02566 ATGCTTCCCAAATCCACCGGAATCCTCTGGCTCGACGGCGACCATGAAGACGCCACTTCTTGGATAACAACAACCAACCACGACAACCACCACTCCCTCCCCGTTCCACCTGCCCCCTCCATTTCCTCCTTCAAATCCATTCTCCAATCCGACTGCTACATCAACTCTTCTACTCCTCTCAATCCTTCTCACCAAGATTTCCATTCCCTTTCTTCTCATCCCCACATTCCTGACCTTCCTTTCTCCTCCAATCCTTCTGATAACTTCCTCTTACACCCTTTAGATTCCTCCTCTTCCTGCTCTCCTTCTCACGCTTTTCCTCTCCATCCTTCCCATTCCAACTCCATCTTACCATCTCACAAATCTTCCTGCTTTTCTTCTCTTCTTAACGTTGTTTGCGGTTCCAGTTTTGATAATGCCTTTGATTTAGGCGGTGAAAATGGTCTGCTTGGATCTTACCAGGGTAACCAAGCTTTGATGGGTTTCACTGGCATTTCTTCTCTTCCTCAAATCGCTACTCAGGAACTCACCTTAAACAACTCCGACTTTCACGTTCCCGATAATCCTCCGGCATTTGGTGCTGGATTTAATTCGGCGGCTGCTTTTGAGAACTTCGATGCCTGTGGTAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCGAAGTGTTCCCGGAGGTCGGTGCGCAGCCGACTCTGTTTCAGAAGCGGGCGGCGCATCGAGTTGGCTCTGGTGGAGCTGATAAACTAGAGAATTTGGAGGTTTCGGGTTTTAAATTAGAAGAAGGCCCAATGTGGACGCCAAATTTGGAGAGGCTGAGGAAGATGAACGGCGATGAGGACATTGAGGACGGCAGCGTGGATGTTTCTCGCTTCAATTATGATTCCGACGAACCCATTGAGTATAATAAGCAAGAGGATAATGTTAATGCTAAAAACTGTGGAAGCAATTCCAATGCCAACAGTACTATCACTGGCGGAGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCGAAAAATCTGATGGCGGAGCGGCGGCGGAGAAAGAAGCTGAATGATAGACTTTACATGCTTAGGTCCGTCGTACCCAAGATAAGCAAGATGGATAGAGCTTCAATACTTGGAGATGCCATTGACTACTTGAAGGAGCTTCTTCAAAGGATAAATGATCTCCATAAAGAACTTGAGTCGACCCCTCCTGGTTCTGTGTTGCAACCTTCTGCGAGCTTTCACCCGTTGACGCCGACGCTGCCAACTCTTCCCTGTCGTGTCAAAGAGGAGCTGTGTCCAAGCAACCTGTCCAGCCCCAATACACAGCCTGCCAGGGTTGAAGTCCGGGTTAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCGGGTCTCTTGCTATCCACCATGAGGGCTTTGGATAACCTTGGCTTGGACATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTAGACGTGTTTCGTGCAGAGCAATCCAAGGAAGGTCAGGAGATGTTGCCTGAGCAAATAAAAGCAGTGCTGTTGGATTCAGCTGGTTTACATGGTGTTGTATAA 1587 48.14 MLPKSTGILWLDGDHEDATSWITTTNHDNHHSLPVPPAPSISSFKSILQSDCYINSSTPLNPSHQDFHSLSSHPHIPDLPFSSNPSDNFLLHPLDSSSSCSPSHAFPLHPSHSNSILPSHKSSCFSSLLNVVCGSSFDNAFDLGGENGLLGSYQGNQALMGFTGISSLPQIATQELTLNNSDFHVPDNPPAFGAGFNSAAAFENFDACGNALFQNRSKVLRPLEVFPEVGAQPTLFQKRAAHRVGSGGADKLENLEVSGFKLEEGPMWTPNLERLRKMNGDEDIEDGSVDVSRFNYDSDEPIEYNKQEDNVNAKNCGSNSNANSTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHKELESTPPGSVLQPSASFHPLTPTLPTLPCRVKEELCPSNLSSPNTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEMLPEQIKAVLLDSAGLHGVV* 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24067204 24073678 + CsaV3_3G027730.1 Csa03g02566 523471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02566 528 CDD bHLH_AtAMS_like 340 404 - -
Csa03g02566 528 MobiDBLite consensus disorder prediction 310 339 - -
Csa03g02566 528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 386 IPR011598 GO:0046983
Csa03g02566 528 SMART finulus 343 392 IPR011598 GO:0046983
Csa03g02566 528 ProSiteProfiles ACT domain profile. 456 528 IPR002912 -
Csa03g02566 528 Pfam Helix-loop-helix DNA-binding domain 344 386 IPR011598 GO:0046983
Csa03g02566 528 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 108 527 - -
Csa03g02566 528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 405 IPR036638 GO:0046983
Csa03g02566 528 MobiDBLite consensus disorder prediction 310 330 - -
Csa03g02566 528 CDD ACT_UUR-ACR-like 457 517 - -
Csa03g02566 528 Gene3D - 331 400 IPR036638 GO:0046983
Csa03g02566 528 Coils Coil 380 400 - -
Csa03g02566 528 PANTHER BHLH TRANSCRIPTIONAL FACTOR 108 527 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00990 Csa-Chr1:6174783 Csa03g02566 Csa-Chr3:24067204 1.31E-154 dispersed
Csa03g02566 Csa-Chr3:24067204 Csa05g01831 Csa-Chr5:21650877 2.16E-26 dispersed
Csa03g02566 Csa-Chr3:24067204 Csa03g04520 Csa-Chr3:39394424 4.89E-37 transposed
Csa03g02566 Csa-Chr3:24067204 Csa02g02231 Csa-Chr2:20027274 1.33E-36 transposed
Csa03g02566 Csa-Chr3:24067204 Csa06g03087 Csa-Chr6:26485325 4.15E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31286 PF00010 HLH 2.20E-09 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02566 - - csv:105434921 1020.76