Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02570 ATGTCCATCCTGCCTTCTCAAATCCAGGGTTCCACTTCAACTTCTTCTTCCTCTGCTTCCTCTCTAAACCCTAATTCCCACCATGGACCTGATTCTCTCTTCTCCTTCTCCTCTCCCACCCATTCCTTTCCATCCTTGCGGATCTCCGACCCCCAATCTCCTCTCCCCGACTCCTCCGACGTTTCTGGCTCGTCATTGCAACCTGCAAATGGTGCTGAATCTTCCAAGAAGGTGAGTGATTCAAACACTCTAAGTGATTTGAAGATGCCAGCTCGGCAAAACACTGGTACCCAGTTGCAGTGTCAATCCAGTGGACATGAGGATGGATCAGTTCTACCAGGGAGTAAAATGTCATCTACTCTAAATTCTTCTCATGATCAGCAAAGTGCTAGGTCTGCAAACTCTCATGGCAATAACAAACGATCATCTGGAAAAAAAGCCCAAATCACAAATGGCAACCATTTGCTTAATTTTCAATACGATCCCATTTCTCGTCCTCATCCTCGAGCCAGAGCTCCTCCTCCAAGAAGACCACAGAAGATAAAGCCGTATAACAAGGATCTCTTTCTGCAGGCTAATTACAAATTTGTGGTATTAGATTCAGGTTATTATACAGATGAATATATGGATCCTGATAAAATGCTGCATTGGGAGGATATCGTATGTGTAAGGTATTCTACACCATCACTGGTCCAGTGTCCTATTTGTCTGGAGCATCCACTCTGTCCTCAAATTACCTCATGTGGACATATTTATTGTTTCCCGTGCATTTTGAGGTATCTGTTAATGGGCCAGGAGGATCATAATGGTGACTGCTGGAAAAAATGCCCTTTGTGTTTTGTGATGTTGTCTCCCAAAGATTTATACACCGTTCATATTGAGCTGTTGAAGCAATATTCTGTTGGTGATACTATAGATTTTATGCTTTTAACTCGCCAGAAAAATTCATTTGCCATATCATGCAAGGATAAGCAAGAGGATGATATCAGGTCAAGTGACAACGATCAAATCTATGATTCTTTCTCAAAATTTATATTTACATCTGATGTGGATCTCTCAGTTCGGAAAGCAGTGTCTTATCTAGATGCCTGGCTAGCAAAAGCAGAAGCAGGGCAGGTAGATGACCTTGAAAAGCTTCCATACGTTTGTGCTGCATTGGAACAACTGGAGCAGAGAAAGAAGTATTGGAATGAACATCAGGCTTGTTTTAAGCATAATGACTATCAGATAGGGTCTAATGTGCTCCTGCCAACTGACAGTACTAGCAGTGCTGGCTCTAGAGCATGCAGTTCCAGACGTGAGGCTTCTTCCATTGATATTAATGAAGGCTGCAAGTTTCAGGGTAATATAGTGCAAGATAAGTTGAACTATTCTAATCCTGTGAATCAGAATGGGGCTATGGATGAATCTTTAGAACTTCAACAAAACTCAAACGAAATTAGAGATGCAAAGGACAAAGACTCGTACAATTTTTACCAGGCTACGGATGGCCAGCATATCATTCTCCATCCATTAAACATGAAGTGTCTTTTACAACATTTTGGGAGTTACGATAGGCTGCCACTCAGAATAAGTGGAAAGATTTTAGAATACGAAACGGTGACTCAGACGGAAGCTACAAGGAGGCGTTATCGTTATTTAAGTCATTTTTCCTTAACAACATCATTTCAGCTCTGTGAAATTGATTTGACCAACCTATTGCCTTCGGTCTCCATGATTCCCTTCATGGATGAGATAAAGAAGCGTGAGAAGCAGAGGAAACAACTTGCAAAAAAGATGCGAAGGGAGAAGATCAAAGAAGAGGCTTCTTCAACGTGTTCTTTGTCAATGATGGCCAGTTCAGGAAGTTCATATCATCACAATACTCCAATCCTTTCTTTGGATGACTTTGAAGCTTTAGGAAGTTCTCCTGTGACATCATCGAGCCCTCCTGTCGGAGGAAGGCAACTATTCTCAAGTGTTACGAGACTGGGCTTCGCTGCCGCACATGATTCTCCATCCTTAAGAATTGAGGAAACTGATTCTCTGCACATTCATGAAGTGAAAAGTGATTTATCAGTTGCCAGCTCGGGCACGCAGAATGCAACTCCATCGTTTGCTAATGTAATATCGAGGGCGAAGTCTGGAGGAAGTATAGAATCTCCAAAGGCGAATGAAGTGGTGGGAAAGAAGGGGAAGAAACCGAGTCGAGTTCTGTTATCCACTGCAGGTGGACGGCGCTATTGA 2226 42.59 MSILPSQIQGSTSTSSSSASSLNPNSHHGPDSLFSFSSPTHSFPSLRISDPQSPLPDSSDVSGSSLQPANGAESSKKVSDSNTLSDLKMPARQNTGTQLQCQSSGHEDGSVLPGSKMSSTLNSSHDQQSARSANSHGNNKRSSGKKAQITNGNHLLNFQYDPISRPHPRARAPPPRRPQKIKPYNKDLFLQANYKFVVLDSGYYTDEYMDPDKMLHWEDIVCVRYSTPSLVQCPICLEHPLCPQITSCGHIYCFPCILRYLLMGQEDHNGDCWKKCPLCFVMLSPKDLYTVHIELLKQYSVGDTIDFMLLTRQKNSFAISCKDKQEDDIRSSDNDQIYDSFSKFIFTSDVDLSVRKAVSYLDAWLAKAEAGQVDDLEKLPYVCAALEQLEQRKKYWNEHQACFKHNDYQIGSNVLLPTDSTSSAGSRACSSRREASSIDINEGCKFQGNIVQDKLNYSNPVNQNGAMDESLELQQNSNEIRDAKDKDSYNFYQATDGQHIILHPLNMKCLLQHFGSYDRLPLRISGKILEYETVTQTEATRRRYRYLSHFSLTTSFQLCEIDLTNLLPSVSMIPFMDEIKKREKQRKQLAKKMRREKIKEEASSTCSLSMMASSGSSYHHNTPILSLDDFEALGSSPVTSSSPPVGGRQLFSSVTRLGFAAAHDSPSLRIEETDSLHIHEVKSDLSVASSGTQNATPSFANVISRAKSGGSIESPKANEVVGKKGKKPSRVLLSTAGGRRY* 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24097307 24107747 - CsaV3_3G027770.1 Csa03g02570 523475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02570 741 CDD RING-HC_RNF10 233 280 - -
Csa03g02570 741 MobiDBLite consensus disorder prediction 1 158 - -
Csa03g02570 741 MobiDBLite consensus disorder prediction 706 741 - -
Csa03g02570 741 SMART ring_2 233 279 IPR001841 -
Csa03g02570 741 SUPERFAMILY RING/U-box 232 286 - -
Csa03g02570 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 336 IPR013083 -
Csa03g02570 741 PANTHER RING FINGER 10 FAMILY MEMBER 91 737 IPR039739 -
Csa03g02570 741 Pfam Zinc finger, C3HC4 type (RING finger) 233 279 IPR018957 GO:0046872
Csa03g02570 741 MobiDBLite consensus disorder prediction 1 182 - -
Csa03g02570 741 Coils Coil 576 599 - -
Csa03g02570 741 ProSitePatterns Zinc finger RING-type signature. 248 257 IPR017907 -
Csa03g02570 741 ProSiteProfiles Zinc finger RING-type profile. 233 279 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02570 Csa-Chr3:24097307 Csa03g03565 Csa-Chr3:31876042 9.90E-07 dispersed
Csa03g02570 Csa-Chr3:24097307 Csa04g02351 Csa-Chr4:23932655 1.19E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02570 - - csv:101203987 1410.59