Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g02581 ATGTCGTCTACTCTGCTAGAGGTGACCCGTTCCTCACACGAGGAGGTGGAGCGACTCGAGCGGCTTATAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAGTATGATCGACACCATCATGTCCACCACCGAAAAACTTGTTGAGATTTACGAAGATAAGGATAGCGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGATTGAAAGAGATTCGTGAATACCATAGAAGGCACCCAGCTGCACGTGTTGTCGATGTTAGCGAGGATGATGGCTTACTGAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTGTACAACCAATATATCAATTCAAAATTTGGAGAGGCCATCGAGTACTCTTCATACCTGGATGTTTTCTCACAGCCCCAGAAAATCTCTCAGAAACTAAAGTTTTCAAGACAATACAGGGAGTACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATCGGATATTCTCAAAGGTTGAATCTGAATTTGAAGAGCGATGGGTTATTGGTACAATTGAAGGATGGGAGAACACTAGTCAAGATAATGGCCATGATTCTGCTCAGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTAGAACTAGGTCCTGAAAGGTTAAAGGAGGGATTGATGGCATTAGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACTCCTCTTCAATTGTTGGACAAAAAACATTTCGCAAAACTGTCTCGGCAACCTATTCAGAATGGGTCGGCTGTGGCTTCACAAAACAATGAAAATTTGAAACAAGTTGCCTTGATGGAAGCAAAAATTGAAAAATTGTGCGATCTTCTGGATGAGACAATTGCTCGGACAAAAGACAACATTGTTAAGAAGCAGGCCTTAACTTATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACCCAAGCTGAGTCTGAAAGTGATGATGAAGAACAACAGATCTATAACCCACTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAACGACATTTCAAGGAATGGCGTCATCAGCACGGAATGCGTTGCCTTGGTATTCCGAATACCAAGAACTTCAATGAAATTACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATACAAGAACGACAAGGAGTTAACAAGTGGCGACCAGATCTCGAAGAAGAATACGAAGATAAGGAGGGTAACATTTACAACAAGAAGACATATACAGATCTGCAGCGCCAGGGATTGATATGA 1527 43.35 MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRSMIDTIMSTTEKLVEIYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISQKLKFSRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWVIGTIEGWENTSQDNGHDSAQHSLIDLDYYSTVEELVELGPERLKEGLMALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKLSRQPIQNGSAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI* 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24349934 24358623 - CsaV3_3G027880.1 Csa03g02581 523486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g02581 508 Coils Coil 352 379 - -
Csa03g02581 508 MobiDBLite consensus disorder prediction 362 381 - -
Csa03g02581 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
Csa03g02581 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 126 173 IPR031774 -
Csa03g02581 508 Pfam Replication stress response SDE2 C-terminal 223 303 - -
Csa03g02581 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398|GO:0003723|GO:0005681
Csa03g02581 508 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Csa03g02581 508 PANTHER BNAA03G01920D PROTEIN 1 508 - -
Csa03g02581 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 508 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02581 Csa-Chr3:24349934 Csa06g00712 Csa-Chr6:5802417 2.32E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g02581 K12827 - csv:101205916 994.186